miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 10264 0.68 0.265828
Target:  5'- cCGCCGCcaggucaacggGCAGacCgUGCGCUACGUCg -3'
miRNA:   3'- uGCGGUG-----------CGUCaaGgGCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 29700 0.68 0.272608
Target:  5'- cUGCaCGCGCAGccaCUCGcCGUCGCGUCg -3'
miRNA:   3'- uGCG-GUGCGUCaa-GGGC-GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 26080 0.68 0.272608
Target:  5'- cGCGUCA-GCGG--CCCGCGCgGCGUUu -3'
miRNA:   3'- -UGCGGUgCGUCaaGGGCGCGgUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 20952 0.68 0.278829
Target:  5'- uUGCCAuuugcuCGCuGUUCCCGCgcuggcgcuuggcGCCACGcUCg -3'
miRNA:   3'- uGCGGU------GCGuCAAGGGCG-------------CGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 30183 0.68 0.278829
Target:  5'- aACGCC-UGCAGcuuccacUUCUCGCcggccagccacGCCGCGUCg -3'
miRNA:   3'- -UGCGGuGCGUC-------AAGGGCG-----------CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 25419 0.68 0.279527
Target:  5'- aGCGCuCACGCA----UCGCGCC-CGUCg -3'
miRNA:   3'- -UGCG-GUGCGUcaagGGCGCGGuGCAG- -5'
27996 3' -60.2 NC_005887.1 + 32768 0.68 0.279527
Target:  5'- cGCGCCAUGCAGccggCUCGUGCgCAgGaUCg -3'
miRNA:   3'- -UGCGGUGCGUCaa--GGGCGCG-GUgC-AG- -5'
27996 3' -60.2 NC_005887.1 + 873 0.68 0.283745
Target:  5'- gUGCCAUGCGGgaugaugagcagaUCCuCGCGCgGCGUg -3'
miRNA:   3'- uGCGGUGCGUCa------------AGG-GCGCGgUGCAg -5'
27996 3' -60.2 NC_005887.1 + 8570 0.68 0.286584
Target:  5'- cGCGCUugGUGGaagCCCGgcaCGCCGCGcCa -3'
miRNA:   3'- -UGCGGugCGUCaa-GGGC---GCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 5574 0.68 0.286584
Target:  5'- uCGCCgACGCuga-CCUGCGCCAguuCGUCg -3'
miRNA:   3'- uGCGG-UGCGucaaGGGCGCGGU---GCAG- -5'
27996 3' -60.2 NC_005887.1 + 15919 0.68 0.286584
Target:  5'- cGCGCggcugcaGCGCGcGUUCCCGCGCgGCc-- -3'
miRNA:   3'- -UGCGg------UGCGU-CAAGGGCGCGgUGcag -5'
27996 3' -60.2 NC_005887.1 + 29255 0.68 0.286584
Target:  5'- cACGCCcUGCAGcacUCCgcgaucgaGCGCCGCGUUc -3'
miRNA:   3'- -UGCGGuGCGUCa--AGGg-------CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 27362 0.68 0.293781
Target:  5'- cACGCCugcggccuGCGCGG--CCUGCGCgGCGUa -3'
miRNA:   3'- -UGCGG--------UGCGUCaaGGGCGCGgUGCAg -5'
27996 3' -60.2 NC_005887.1 + 29971 0.68 0.293781
Target:  5'- gACGUUguuuGCGCGGUgcugCUCGgccUGCCACGUCa -3'
miRNA:   3'- -UGCGG----UGCGUCAa---GGGC---GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 41124 0.68 0.301119
Target:  5'- aGCGCCGCGCAGcgCCCGC-CagauaAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCaaGGGCGcGg----UgCAg -5'
27996 3' -60.2 NC_005887.1 + 15692 0.68 0.301119
Target:  5'- cCGCCGCGCGGccggaugaUUCCGCcGCCgGCGUg -3'
miRNA:   3'- uGCGGUGCGUCa-------AGGGCG-CGG-UGCAg -5'
27996 3' -60.2 NC_005887.1 + 14006 0.68 0.301119
Target:  5'- uGCGCCGCGCGccUCCgcaaccgccggCGCGCCGCc-- -3'
miRNA:   3'- -UGCGGUGCGUcaAGG-----------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 12388 0.67 0.308597
Target:  5'- cGCGCgGCGguGUUCgCgGCGCUcgacacCGUCg -3'
miRNA:   3'- -UGCGgUGCguCAAG-GgCGCGGu-----GCAG- -5'
27996 3' -60.2 NC_005887.1 + 26745 0.67 0.308597
Target:  5'- cUGCUGCGCGacgCCCguGCGCUGCGUCu -3'
miRNA:   3'- uGCGGUGCGUcaaGGG--CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 15388 0.67 0.308597
Target:  5'- gACGCCGCGCuGaUCgCGCGCgGgcagcggauCGUCg -3'
miRNA:   3'- -UGCGGUGCGuCaAGgGCGCGgU---------GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.