Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27996 | 3' | -60.2 | NC_005887.1 | + | 15388 | 0.67 | 0.308597 |
Target: 5'- gACGCCGCGCuGaUCgCGCGCgGgcagcggauCGUCg -3' miRNA: 3'- -UGCGGUGCGuCaAGgGCGCGgU---------GCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 15113 | 0.67 | 0.316216 |
Target: 5'- cGCGCgAUGCAGU---UGCGCCGCGa- -3' miRNA: 3'- -UGCGgUGCGUCAaggGCGCGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 14940 | 0.67 | 0.316216 |
Target: 5'- cACGCCGCGCGcugCCguacgaCGCGCCGCa-- -3' miRNA: 3'- -UGCGGUGCGUcaaGG------GCGCGGUGcag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 8631 | 0.67 | 0.323975 |
Target: 5'- uCGCCGCgaucgaGCAGaUCgaccgCCGCGCCACGa- -3' miRNA: 3'- uGCGGUG------CGUCaAG-----GGCGCGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 1252 | 0.67 | 0.323975 |
Target: 5'- -gGCCGucUGCAGUUCCUcUGCCuCGUCc -3' miRNA: 3'- ugCGGU--GCGUCAAGGGcGCGGuGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 38421 | 0.67 | 0.331876 |
Target: 5'- cGCGCCGCGgAuGUUggUCUuCGCCAUGUCg -3' miRNA: 3'- -UGCGGUGCgU-CAA--GGGcGCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 40654 | 0.67 | 0.339918 |
Target: 5'- cAUGCCGCGCAGcuugcgCUCGUGCUcgggGCGaUCg -3' miRNA: 3'- -UGCGGUGCGUCaa----GGGCGCGG----UGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 16237 | 0.67 | 0.339918 |
Target: 5'- cGCGCCGUGCAGgacaUCCUGCucgacGCCAUGa- -3' miRNA: 3'- -UGCGGUGCGUCa---AGGGCG-----CGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 322 | 0.67 | 0.339918 |
Target: 5'- cCGCCuuguACGCA--UCgCGCGCCGCGg- -3' miRNA: 3'- uGCGG----UGCGUcaAGgGCGCGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 21683 | 0.67 | 0.34481 |
Target: 5'- cCGUCGacaaagauauucgaUGCAGUgCCCGCaacagacaguccgGCCACGUCg -3' miRNA: 3'- uGCGGU--------------GCGUCAaGGGCG-------------CGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 17291 | 0.67 | 0.348099 |
Target: 5'- gGCGCCGCGCgcgcaaacgccGGUUCggCGCaCCGCGUg -3' miRNA: 3'- -UGCGGUGCG-----------UCAAGg-GCGcGGUGCAg -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 278 | 0.66 | 0.356421 |
Target: 5'- gACGUgGCGCGGgaaCUGCGUgGCGUg -3' miRNA: 3'- -UGCGgUGCGUCaagGGCGCGgUGCAg -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 17590 | 0.66 | 0.356421 |
Target: 5'- cACGCC-CGUcaaUCCCGCGCuCGCG-Cg -3' miRNA: 3'- -UGCGGuGCGucaAGGGCGCG-GUGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 22413 | 0.66 | 0.356421 |
Target: 5'- aGCGCCACGgAGgcugacaCCGgGCggcaGCGUCa -3' miRNA: 3'- -UGCGGUGCgUCaag----GGCgCGg---UGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 11561 | 0.66 | 0.356421 |
Target: 5'- cGCGCCauugaucgcGCGCAGaaggaacUCgCCGCGCgCACGgUCg -3' miRNA: 3'- -UGCGG---------UGCGUCa------AG-GGCGCG-GUGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 27344 | 0.66 | 0.356421 |
Target: 5'- uGCGCCACGCGcagcggCGCGCagacgaGCGUCg -3' miRNA: 3'- -UGCGGUGCGUcaagg-GCGCGg-----UGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 24472 | 0.66 | 0.364881 |
Target: 5'- uCGUCGCgGCGGacaggUUCCGgGCCcACGUCg -3' miRNA: 3'- uGCGGUG-CGUCa----AGGGCgCGG-UGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 41984 | 0.66 | 0.364881 |
Target: 5'- uCGCCuaucaGCAGcacggCCUGCGgcCCACGUCg -3' miRNA: 3'- uGCGGug---CGUCaa---GGGCGC--GGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 14225 | 0.66 | 0.364881 |
Target: 5'- gGCGCCGCGCuGUU-CgGCGCgGCaUCc -3' miRNA: 3'- -UGCGGUGCGuCAAgGgCGCGgUGcAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 32549 | 0.66 | 0.364881 |
Target: 5'- gUGCCAgGCuuucaccgcGUUCUCGCGCCaguGCGUg -3' miRNA: 3'- uGCGGUgCGu--------CAAGGGCGCGG---UGCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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