Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27996 | 3' | -60.2 | NC_005887.1 | + | 716 | 0.69 | 0.246305 |
Target: 5'- uGCGCCGCGCAGacgcagcagaUCCucaCGgGCCGCGcCg -3' miRNA: 3'- -UGCGGUGCGUCa---------AGG---GCgCGGUGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 11325 | 0.69 | 0.240067 |
Target: 5'- -aGCCGCGgccugcgaaUAGUggCCUGCGCCGCGcCa -3' miRNA: 3'- ugCGGUGC---------GUCAa-GGGCGCGGUGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 23159 | 0.69 | 0.240067 |
Target: 5'- cGCGCCGC-CuGUcuccacgCCCGCGCCGC-UCa -3' miRNA: 3'- -UGCGGUGcGuCAa------GGGCGCGGUGcAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 37726 | 0.69 | 0.233961 |
Target: 5'- cGCGCCG-GCGGccaCCgGCGCCGCGg- -3' miRNA: 3'- -UGCGGUgCGUCaa-GGgCGCGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 30160 | 0.69 | 0.233358 |
Target: 5'- gGCGCUguccuuCGCGGUcugcaugUUCUGCaGCCACGUCa -3' miRNA: 3'- -UGCGGu-----GCGUCA-------AGGGCG-CGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 33849 | 0.7 | 0.222141 |
Target: 5'- aACGCCACGCcGUUacgcgaCUCGaGCCACGUg -3' miRNA: 3'- -UGCGGUGCGuCAA------GGGCgCGGUGCAg -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 8095 | 0.7 | 0.221564 |
Target: 5'- aGCGCgCGCGCAGcUCgCCGCGCUcgccgagGCGcCg -3' miRNA: 3'- -UGCG-GUGCGUCaAG-GGCGCGG-------UGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 26523 | 0.7 | 0.221564 |
Target: 5'- aGCGCC-UGCAGUUucaggucgugcacCUCGUGCCACGg- -3' miRNA: 3'- -UGCGGuGCGUCAA-------------GGGCGCGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 41191 | 0.7 | 0.220987 |
Target: 5'- cCGCCugGCugcauccgaCCCGCGCguCGUCg -3' miRNA: 3'- uGCGGugCGucaa-----GGGCGCGguGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 36602 | 0.7 | 0.205367 |
Target: 5'- gACGCCGCGCaccuuuuguuucAGUgcaUCgCGCGCCuucuccugcGCGUCg -3' miRNA: 3'- -UGCGGUGCG------------UCA---AGgGCGCGG---------UGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 27646 | 0.7 | 0.205367 |
Target: 5'- uCGCCGCGCccggCCCGCccGCCGCGa- -3' miRNA: 3'- uGCGGUGCGucaaGGGCG--CGGUGCag -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 34654 | 0.7 | 0.200025 |
Target: 5'- cGCGCCGgcuUGcCGGUUUCCGgaucCGCCACGUUg -3' miRNA: 3'- -UGCGGU---GC-GUCAAGGGC----GCGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 32714 | 0.7 | 0.200025 |
Target: 5'- -aGCCGCGCGGUUCaCCcacggcgggguaGCGCgGCGcUCg -3' miRNA: 3'- ugCGGUGCGUCAAG-GG------------CGCGgUGC-AG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 10623 | 0.7 | 0.200025 |
Target: 5'- cACGCUucuCGCGGagCCUGgGCgGCGUCg -3' miRNA: 3'- -UGCGGu--GCGUCaaGGGCgCGgUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 14980 | 0.71 | 0.189701 |
Target: 5'- uACGCCGCGCAGg--CCGCGCaggccgcagGCGUg -3' miRNA: 3'- -UGCGGUGCGUCaagGGCGCGg--------UGCAg -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 24612 | 0.71 | 0.189701 |
Target: 5'- -aGCCGCGCGG---CCGUGCCgaGCGUCu -3' miRNA: 3'- ugCGGUGCGUCaagGGCGCGG--UGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 32949 | 0.71 | 0.189701 |
Target: 5'- aACGaCCGCGCGaauacGUUCUCGCGCgGCG-Cg -3' miRNA: 3'- -UGC-GGUGCGU-----CAAGGGCGCGgUGCaG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 31258 | 0.71 | 0.184717 |
Target: 5'- cUGCCAC-CAGUaCUCGUcgGCCGCGUCg -3' miRNA: 3'- uGCGGUGcGUCAaGGGCG--CGGUGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 37575 | 0.71 | 0.184717 |
Target: 5'- uCGCCggcugGCGuCAGcUUCCCGCGCU-CGUCg -3' miRNA: 3'- uGCGG-----UGC-GUC-AAGGGCGCGGuGCAG- -5' |
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27996 | 3' | -60.2 | NC_005887.1 | + | 26523 | 0.71 | 0.175096 |
Target: 5'- cGCGCCGCGCAagcgcugcaCCUGCGCCuCGUg -3' miRNA: 3'- -UGCGGUGCGUcaa------GGGCGCGGuGCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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