miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 35517 0.74 0.112994
Target:  5'- cACGUCGauguUGCAGa-CCCGCGCCACGUa -3'
miRNA:   3'- -UGCGGU----GCGUCaaGGGCGCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 26745 0.67 0.308597
Target:  5'- cUGCUGCGCGacgCCCguGCGCUGCGUCu -3'
miRNA:   3'- uGCGGUGCGUcaaGGG--CGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 36029 0.75 0.087781
Target:  5'- aACGCCGcCGUAcagCuuGCGCCACGUCg -3'
miRNA:   3'- -UGCGGU-GCGUcaaGggCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 41124 0.68 0.301119
Target:  5'- aGCGCCGCGCAGcgCCCGC-CagauaAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCaaGGGCGcGg----UgCAg -5'
27996 3' -60.2 NC_005887.1 + 30160 0.69 0.233358
Target:  5'- gGCGCUguccuuCGCGGUcugcaugUUCUGCaGCCACGUCa -3'
miRNA:   3'- -UGCGGu-----GCGUCA-------AGGGCG-CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 33849 0.7 0.222141
Target:  5'- aACGCCACGCcGUUacgcgaCUCGaGCCACGUg -3'
miRNA:   3'- -UGCGGUGCGuCAA------GGGCgCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 19546 0.77 0.063652
Target:  5'- uGCGCCGCGUAGcUCgugaacaacagcggCCGCGCCgGCGUCg -3'
miRNA:   3'- -UGCGGUGCGUCaAG--------------GGCGCGG-UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 11325 0.69 0.240067
Target:  5'- -aGCCGCGgccugcgaaUAGUggCCUGCGCCGCGcCa -3'
miRNA:   3'- ugCGGUGC---------GUCAa-GGGCGCGGUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 24791 0.75 0.090294
Target:  5'- cGCGCCggucACGUAGUUCCaguaCGCGCCgaccgACGUCa -3'
miRNA:   3'- -UGCGG----UGCGUCAAGG----GCGCGG-----UGCAG- -5'
27996 3' -60.2 NC_005887.1 + 32949 0.71 0.189701
Target:  5'- aACGaCCGCGCGaauacGUUCUCGCGCgGCG-Cg -3'
miRNA:   3'- -UGC-GGUGCGU-----CAAGGGCGCGgUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 278 0.66 0.356421
Target:  5'- gACGUgGCGCGGgaaCUGCGUgGCGUg -3'
miRNA:   3'- -UGCGgUGCGUCaagGGCGCGgUGCAg -5'
27996 3' -60.2 NC_005887.1 + 26523 0.7 0.221564
Target:  5'- aGCGCC-UGCAGUUucaggucgugcacCUCGUGCCACGg- -3'
miRNA:   3'- -UGCGGuGCGUCAA-------------GGGCGCGGUGCag -5'
27996 3' -60.2 NC_005887.1 + 14940 0.67 0.316216
Target:  5'- cACGCCGCGCGcugCCguacgaCGCGCCGCa-- -3'
miRNA:   3'- -UGCGGUGCGUcaaGG------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 15388 0.67 0.308597
Target:  5'- gACGCCGCGCuGaUCgCGCGCgGgcagcggauCGUCg -3'
miRNA:   3'- -UGCGGUGCGuCaAGgGCGCGgU---------GCAG- -5'
27996 3' -60.2 NC_005887.1 + 37401 0.67 0.308597
Target:  5'- gGCGCUGCGCGGUcgcgacugCCUGCacGCCAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCAa-------GGGCG--CGGUgCAg -5'
27996 3' -60.2 NC_005887.1 + 15692 0.68 0.301119
Target:  5'- cCGCCGCGCGGccggaugaUUCCGCcGCCgGCGUg -3'
miRNA:   3'- uGCGGUGCGUCa-------AGGGCG-CGG-UGCAg -5'
27996 3' -60.2 NC_005887.1 + 14006 0.68 0.301119
Target:  5'- uGCGCCGCGCGccUCCgcaaccgccggCGCGCCGCc-- -3'
miRNA:   3'- -UGCGGUGCGUcaAGG-----------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 5574 0.68 0.286584
Target:  5'- uCGCCgACGCuga-CCUGCGCCAguuCGUCg -3'
miRNA:   3'- uGCGG-UGCGucaaGGGCGCGGU---GCAG- -5'
27996 3' -60.2 NC_005887.1 + 36680 0.69 0.250752
Target:  5'- uUGCCAgaauuCGguGUcggcuuccaucugcUUCCGCGUCACGUCg -3'
miRNA:   3'- uGCGGU-----GCguCA--------------AGGGCGCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 8095 0.7 0.221564
Target:  5'- aGCGCgCGCGCAGcUCgCCGCGCUcgccgagGCGcCg -3'
miRNA:   3'- -UGCG-GUGCGUCaAG-GGCGCGG-------UGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.