miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27996 3' -60.2 NC_005887.1 + 41191 0.7 0.220987
Target:  5'- cCGCCugGCugcauccgaCCCGCGCguCGUCg -3'
miRNA:   3'- uGCGGugCGucaa-----GGGCGCGguGCAG- -5'
27996 3' -60.2 NC_005887.1 + 34654 0.7 0.200025
Target:  5'- cGCGCCGgcuUGcCGGUUUCCGgaucCGCCACGUUg -3'
miRNA:   3'- -UGCGGU---GC-GUCAAGGGC----GCGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 32949 0.71 0.189701
Target:  5'- aACGaCCGCGCGaauacGUUCUCGCGCgGCG-Cg -3'
miRNA:   3'- -UGC-GGUGCGU-----CAAGGGCGCGgUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 14980 0.71 0.189701
Target:  5'- uACGCCGCGCAGg--CCGCGCaggccgcagGCGUg -3'
miRNA:   3'- -UGCGGUGCGUCaagGGCGCGg--------UGCAg -5'
27996 3' -60.2 NC_005887.1 + 31258 0.71 0.184717
Target:  5'- cUGCCAC-CAGUaCUCGUcgGCCGCGUCg -3'
miRNA:   3'- uGCGGUGcGUCAaGGGCG--CGGUGCAG- -5'
27996 3' -60.2 NC_005887.1 + 5574 0.68 0.286584
Target:  5'- uCGCCgACGCuga-CCUGCGCCAguuCGUCg -3'
miRNA:   3'- uGCGG-UGCGucaaGGGCGCGGU---GCAG- -5'
27996 3' -60.2 NC_005887.1 + 14006 0.68 0.301119
Target:  5'- uGCGCCGCGCGccUCCgcaaccgccggCGCGCCGCc-- -3'
miRNA:   3'- -UGCGGUGCGUcaAGG-----------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 862 0.66 0.39918
Target:  5'- gUGCCcguggACGCGuggCCCGCGCCGCcggacgaGUCa -3'
miRNA:   3'- uGCGG-----UGCGUcaaGGGCGCGGUG-------CAG- -5'
27996 3' -60.2 NC_005887.1 + 40125 0.66 0.391083
Target:  5'- gACGCCuacagcgUGCGGUgcgcgCUgCGCGCCGCGcUCg -3'
miRNA:   3'- -UGCGGu------GCGUCAa----GG-GCGCGGUGC-AG- -5'
27996 3' -60.2 NC_005887.1 + 26425 0.66 0.391083
Target:  5'- -gGCCGCGCGGgaaCgCGCGCUGCa-- -3'
miRNA:   3'- ugCGGUGCGUCaa-GgGCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 31195 0.66 0.382214
Target:  5'- cAUGCgCGCGUAGaUUUCgGgCGCCGCGUg -3'
miRNA:   3'- -UGCG-GUGCGUC-AAGGgC-GCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 6810 0.66 0.373479
Target:  5'- cACGCUGCGCGa--CUgGCGCUACGUg -3'
miRNA:   3'- -UGCGGUGCGUcaaGGgCGCGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 1479 0.66 0.373479
Target:  5'- gACGCCGacggcgUGCGGcgCUCGCGCgGCG-Cg -3'
miRNA:   3'- -UGCGGU------GCGUCaaGGGCGCGgUGCaG- -5'
27996 3' -60.2 NC_005887.1 + 30548 0.66 0.370885
Target:  5'- gACGCCACGCAGcagcgUCuuGUacuucgacgagcugGUCAuCGUCg -3'
miRNA:   3'- -UGCGGUGCGUCa----AGggCG--------------CGGU-GCAG- -5'
27996 3' -60.2 NC_005887.1 + 32549 0.66 0.364881
Target:  5'- gUGCCAgGCuuucaccgcGUUCUCGCGCCaguGCGUg -3'
miRNA:   3'- uGCGGUgCGu--------CAAGGGCGCGG---UGCAg -5'
27996 3' -60.2 NC_005887.1 + 17291 0.67 0.348099
Target:  5'- gGCGCCGCGCgcgcaaacgccGGUUCggCGCaCCGCGUg -3'
miRNA:   3'- -UGCGGUGCG-----------UCAAGg-GCGcGGUGCAg -5'
27996 3' -60.2 NC_005887.1 + 14940 0.67 0.316216
Target:  5'- cACGCCGCGCGcugCCguacgaCGCGCCGCa-- -3'
miRNA:   3'- -UGCGGUGCGUcaaGG------GCGCGGUGcag -5'
27996 3' -60.2 NC_005887.1 + 15388 0.67 0.308597
Target:  5'- gACGCCGCGCuGaUCgCGCGCgGgcagcggauCGUCg -3'
miRNA:   3'- -UGCGGUGCGuCaAGgGCGCGgU---------GCAG- -5'
27996 3' -60.2 NC_005887.1 + 37401 0.67 0.308597
Target:  5'- gGCGCUGCGCGGUcgcgacugCCUGCacGCCAgGUg -3'
miRNA:   3'- -UGCGGUGCGUCAa-------GGGCG--CGGUgCAg -5'
27996 3' -60.2 NC_005887.1 + 15692 0.68 0.301119
Target:  5'- cCGCCGCGCGGccggaugaUUCCGCcGCCgGCGUg -3'
miRNA:   3'- uGCGGUGCGUCa-------AGGGCG-CGG-UGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.