miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27998 5' -65.7 NC_005887.1 + 5835 0.66 0.231654
Target:  5'- ---uGCCGCCGCCCgAUgCugCGGUCg -3'
miRNA:   3'- gcucCGGCGGUGGG-UGgGugGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 39656 0.66 0.22824
Target:  5'- --cGGCCGCUugCCGCCCguacgcuucacgcgcACCaGGUgCu -3'
miRNA:   3'- gcuCCGGCGGugGGUGGG---------------UGG-CCGgG- -5'
27998 5' -65.7 NC_005887.1 + 25849 0.66 0.225988
Target:  5'- gCGAucGGCCugcgacaucGCCgACCaGCCCGCCGGaUCCu -3'
miRNA:   3'- -GCU--CCGG---------CGG-UGGgUGGGUGGCC-GGG- -5'
27998 5' -65.7 NC_005887.1 + 1003 0.66 0.215009
Target:  5'- --cGGCCGCCgugcGCgCGCUguaCACCGGCUUg -3'
miRNA:   3'- gcuCCGGCGG----UGgGUGG---GUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 16512 0.66 0.215009
Target:  5'- uCGcAGGCCGaUCGCgUCG-CCGCCGGCgCCg -3'
miRNA:   3'- -GC-UCCGGC-GGUG-GGUgGGUGGCCG-GG- -5'
27998 5' -65.7 NC_005887.1 + 8963 0.66 0.215009
Target:  5'- gCGAuGaGCC-UCAUCCuGCCCGCCGGCgCg -3'
miRNA:   3'- -GCU-C-CGGcGGUGGG-UGGGUGGCCGgG- -5'
27998 5' -65.7 NC_005887.1 + 26238 0.66 0.209693
Target:  5'- gCGcGGCgcagCGCCACCgGaaagcguuucaCCACCGGCCa -3'
miRNA:   3'- -GCuCCG----GCGGUGGgUg----------GGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 11880 0.66 0.209693
Target:  5'- -cGGGCCGCgucgCGCaCCGCCUguuCCaGCCCg -3'
miRNA:   3'- gcUCCGGCG----GUG-GGUGGGu--GGcCGGG- -5'
27998 5' -65.7 NC_005887.1 + 41472 0.66 0.209693
Target:  5'- gCGAGGauCUGCUcaucauCCCGCauggCACCGGCUCg -3'
miRNA:   3'- -GCUCC--GGCGGu-----GGGUGg---GUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 34149 0.66 0.204491
Target:  5'- aGAgGGCCGaCUugCCagaGCCgACaGGCCCg -3'
miRNA:   3'- gCU-CCGGC-GGugGG---UGGgUGgCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 40039 0.67 0.184789
Target:  5'- uCGAGGCgGCCgGCCUacGCCCgauACCGuuCCg -3'
miRNA:   3'- -GCUCCGgCGG-UGGG--UGGG---UGGCcgGG- -5'
27998 5' -65.7 NC_005887.1 + 31772 0.67 0.184789
Target:  5'- uCGucGgaGUCGCCCACCCugCGaGCCa -3'
miRNA:   3'- -GCucCggCGGUGGGUGGGugGC-CGGg -5'
27998 5' -65.7 NC_005887.1 + 23433 0.67 0.184789
Target:  5'- uCGucGCaGCCGCCCGccauCCCGCCGcuuccaccggaaGCCCg -3'
miRNA:   3'- -GCucCGgCGGUGGGU----GGGUGGC------------CGGG- -5'
27998 5' -65.7 NC_005887.1 + 21314 0.67 0.184789
Target:  5'- -cGGGCaCGCCcaccgcGCCgACCgCAUCGGCCg -3'
miRNA:   3'- gcUCCG-GCGG------UGGgUGG-GUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 5259 0.67 0.180132
Target:  5'- cCGAGGCUG-UGCUCGCCCGCuuCGGUgCg -3'
miRNA:   3'- -GCUCCGGCgGUGGGUGGGUG--GCCGgG- -5'
27998 5' -65.7 NC_005887.1 + 36298 0.67 0.17558
Target:  5'- uGAGuGCCG-CGCCgCugCCACCaGCaCCa -3'
miRNA:   3'- gCUC-CGGCgGUGG-GugGGUGGcCG-GG- -5'
27998 5' -65.7 NC_005887.1 + 28735 0.67 0.17113
Target:  5'- --cGGCCGCCGCgCGCCgCGCU-GCCa -3'
miRNA:   3'- gcuCCGGCGGUGgGUGG-GUGGcCGGg -5'
27998 5' -65.7 NC_005887.1 + 25021 0.67 0.17113
Target:  5'- --cGGCgGCCGCCgGCCaGCCGGUa- -3'
miRNA:   3'- gcuCCGgCGGUGGgUGGgUGGCCGgg -5'
27998 5' -65.7 NC_005887.1 + 28660 0.67 0.170252
Target:  5'- --uGGCCGCCcguggucgagauCCCACCCGUCGcGCCg -3'
miRNA:   3'- gcuCCGGCGGu-----------GGGUGGGUGGC-CGGg -5'
27998 5' -65.7 NC_005887.1 + 16399 0.68 0.166781
Target:  5'- aGAcGGCCGCCGgCCggaaGCUCACgcaGGCCg -3'
miRNA:   3'- gCU-CCGGCGGUgGG----UGGGUGg--CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.