miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27998 5' -65.7 NC_005887.1 + 34149 0.66 0.204491
Target:  5'- aGAgGGCCGaCUugCCagaGCCgACaGGCCCg -3'
miRNA:   3'- gCU-CCGGC-GGugGG---UGGgUGgCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 4294 0.68 0.150363
Target:  5'- gCGAGGUCGaCAUCCucGCCgagGCCGGCCa -3'
miRNA:   3'- -GCUCCGGCgGUGGG--UGGg--UGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 1796 0.68 0.162532
Target:  5'- --cGGCCGCUACCCGaaggacgugCCGCCGaCCUg -3'
miRNA:   3'- gcuCCGGCGGUGGGUg--------GGUGGCcGGG- -5'
27998 5' -65.7 NC_005887.1 + 16399 0.68 0.166781
Target:  5'- aGAcGGCCGCCGgCCggaaGCUCACgcaGGCCg -3'
miRNA:   3'- gCU-CCGGCGGUgGG----UGGGUGg--CCGGg -5'
27998 5' -65.7 NC_005887.1 + 25021 0.67 0.17113
Target:  5'- --cGGCgGCCGCCgGCCaGCCGGUa- -3'
miRNA:   3'- gcuCCGgCGGUGGgUGGgUGGCCGgg -5'
27998 5' -65.7 NC_005887.1 + 21314 0.67 0.184789
Target:  5'- -cGGGCaCGCCcaccgcGCCgACCgCAUCGGCCg -3'
miRNA:   3'- gcUCCG-GCGG------UGGgUGG-GUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 23433 0.67 0.184789
Target:  5'- uCGucGCaGCCGCCCGccauCCCGCCGcuuccaccggaaGCCCg -3'
miRNA:   3'- -GCucCGgCGGUGGGU----GGGUGGC------------CGGG- -5'
27998 5' -65.7 NC_005887.1 + 31772 0.67 0.184789
Target:  5'- uCGucGgaGUCGCCCACCCugCGaGCCa -3'
miRNA:   3'- -GCucCggCGGUGGGUGGGugGC-CGGg -5'
27998 5' -65.7 NC_005887.1 + 40039 0.67 0.184789
Target:  5'- uCGAGGCgGCCgGCCUacGCCCgauACCGuuCCg -3'
miRNA:   3'- -GCUCCGgCGG-UGGG--UGGG---UGGCcgGG- -5'
27998 5' -65.7 NC_005887.1 + 41973 0.68 0.142717
Target:  5'- gCGcGGCgCGCuCGCCUAUcagcagcacggCCugCGGCCCa -3'
miRNA:   3'- -GCuCCG-GCG-GUGGGUG-----------GGugGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 38305 0.69 0.135428
Target:  5'- aGGGuGCCGUCGCCguUgucgaUCACCGGCUCa -3'
miRNA:   3'- gCUC-CGGCGGUGGguG-----GGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 26928 0.69 0.131913
Target:  5'- --uGGCCGCCGUCgacgaACCCuGCUGGCCCc -3'
miRNA:   3'- gcuCCGGCGGUGGg----UGGG-UGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 23544 0.72 0.081521
Target:  5'- --uGGCagcguacgcugaCGCCGCCCGCaUCGCCGGCCg -3'
miRNA:   3'- gcuCCG------------GCGGUGGGUG-GGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 539 0.71 0.083759
Target:  5'- --cGGCCGCCGCgCGCCgCGCCGGauaCa -3'
miRNA:   3'- gcuCCGGCGGUGgGUGG-GUGGCCgg-G- -5'
27998 5' -65.7 NC_005887.1 + 12563 0.71 0.085359
Target:  5'- uCGAcGGCCGCCGgcaugcgcauggugUCCGCCgACCcGGCCg -3'
miRNA:   3'- -GCU-CCGGCGGU--------------GGGUGGgUGG-CCGGg -5'
27998 5' -65.7 NC_005887.1 + 5429 0.71 0.08841
Target:  5'- gCGAccGGCgCGaCCACgCCGCCCGCUGGCaCUc -3'
miRNA:   3'- -GCU--CCG-GC-GGUG-GGUGGGUGGCCG-GG- -5'
27998 5' -65.7 NC_005887.1 + 5502 0.71 0.090827
Target:  5'- --cGGCCGCagCACCgGCCgcagCACCGGCCg -3'
miRNA:   3'- gcuCCGGCG--GUGGgUGG----GUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 35736 0.71 0.093306
Target:  5'- uCGcGGUCGUgGCCCACUCGCuCGGCUUc -3'
miRNA:   3'- -GCuCCGGCGgUGGGUGGGUG-GCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 25088 0.71 0.093306
Target:  5'- uGAGGCCGCCGCCgucggauuuCGCgaCCGguuguCCGGCCg -3'
miRNA:   3'- gCUCCGGCGGUGG---------GUG--GGU-----GGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 34648 0.7 0.118681
Target:  5'- aCGAGGCgCGCCGgCUugCCGguuuCCGGaUCCg -3'
miRNA:   3'- -GCUCCG-GCGGUgGGugGGU----GGCC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.