miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27998 5' -65.7 NC_005887.1 + 539 0.71 0.083759
Target:  5'- --cGGCCGCCGCgCGCCgCGCCGGauaCa -3'
miRNA:   3'- gcuCCGGCGGUGgGUGG-GUGGCCgg-G- -5'
27998 5' -65.7 NC_005887.1 + 754 0.71 0.098458
Target:  5'- --cGGCCGCCGCaCCugggcCgCCGCUGGCCg -3'
miRNA:   3'- gcuCCGGCGGUG-GGu----G-GGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 1003 0.66 0.215009
Target:  5'- --cGGCCGCCgugcGCgCGCUguaCACCGGCUUg -3'
miRNA:   3'- gcuCCGGCGG----UGgGUGG---GUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 1559 0.72 0.071166
Target:  5'- gCGucGCCGCCACgaaCCucgaCCGCCGGCUCg -3'
miRNA:   3'- -GCucCGGCGGUG---GGug--GGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 1796 0.68 0.162532
Target:  5'- --cGGCCGCUACCCGaaggacgugCCGCCGaCCUg -3'
miRNA:   3'- gcuCCGGCGGUGGGUg--------GGUGGCcGGG- -5'
27998 5' -65.7 NC_005887.1 + 2953 0.69 0.121868
Target:  5'- aCGcGGUCGCgACCacgguuGCgCCGCCGGCCUc -3'
miRNA:   3'- -GCuCCGGCGgUGGg-----UG-GGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 4294 0.68 0.150363
Target:  5'- gCGAGGUCGaCAUCCucGCCgagGCCGGCCa -3'
miRNA:   3'- -GCUCCGGCgGUGGG--UGGg--UGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 5259 0.67 0.180132
Target:  5'- cCGAGGCUG-UGCUCGCCCGCuuCGGUgCg -3'
miRNA:   3'- -GCUCCGGCgGUGGGUGGGUG--GCCGgG- -5'
27998 5' -65.7 NC_005887.1 + 5429 0.71 0.08841
Target:  5'- gCGAccGGCgCGaCCACgCCGCCCGCUGGCaCUc -3'
miRNA:   3'- -GCU--CCG-GC-GGUG-GGUGGGUGGCCG-GG- -5'
27998 5' -65.7 NC_005887.1 + 5502 0.71 0.090827
Target:  5'- --cGGCCGCagCACCgGCCgcagCACCGGCCg -3'
miRNA:   3'- gcuCCGGCG--GUGGgUGG----GUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 5835 0.66 0.231654
Target:  5'- ---uGCCGCCGCCCgAUgCugCGGUCg -3'
miRNA:   3'- gcucCGGCGGUGGG-UGgGugGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 8963 0.66 0.215009
Target:  5'- gCGAuGaGCC-UCAUCCuGCCCGCCGGCgCg -3'
miRNA:   3'- -GCU-C-CGGcGGUGGG-UGGGUGGCCGgG- -5'
27998 5' -65.7 NC_005887.1 + 9923 0.72 0.071166
Target:  5'- uGAucGCCGCCGgCCACaucgCCGCCGGCCa -3'
miRNA:   3'- gCUc-CGGCGGUgGGUG----GGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 10658 0.69 0.121868
Target:  5'- cCGAGGUucUGCCgACgaACCaGCCGGCCCg -3'
miRNA:   3'- -GCUCCG--GCGG-UGggUGGgUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 10738 0.68 0.15797
Target:  5'- aGuGGCgGCCaguugaACCCGgcacauuCCCGCUGGCUCa -3'
miRNA:   3'- gCuCCGgCGG------UGGGU-------GGGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 11880 0.66 0.209693
Target:  5'- -cGGGCCGCgucgCGCaCCGCCUguuCCaGCCCg -3'
miRNA:   3'- gcUCCGGCG----GUG-GGUGGGu--GGcCGGG- -5'
27998 5' -65.7 NC_005887.1 + 12535 0.68 0.150363
Target:  5'- uGGcGCCGCgcaCACCCGCagacuuccagCUACUGGCCCg -3'
miRNA:   3'- gCUcCGGCG---GUGGGUG----------GGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 12563 0.71 0.085359
Target:  5'- uCGAcGGCCGCCGgcaugcgcauggugUCCGCCgACCcGGCCg -3'
miRNA:   3'- -GCU-CCGGCGGU--------------GGGUGGgUGG-CCGGg -5'
27998 5' -65.7 NC_005887.1 + 12860 0.7 0.103879
Target:  5'- uCGAGGCCGCCGgCUACgaCAUCGuGCUg -3'
miRNA:   3'- -GCUCCGGCGGUgGGUGg-GUGGC-CGGg -5'
27998 5' -65.7 NC_005887.1 + 13365 0.69 0.128483
Target:  5'- -aAGGCCGCCAaaagcgaccuggUCCACUUcguCCGGCUCg -3'
miRNA:   3'- gcUCCGGCGGU------------GGGUGGGu--GGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.