miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27998 5' -65.7 NC_005887.1 + 41973 0.68 0.142717
Target:  5'- gCGcGGCgCGCuCGCCUAUcagcagcacggCCugCGGCCCa -3'
miRNA:   3'- -GCuCCG-GCG-GUGGGUG-----------GGugGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 41472 0.66 0.209693
Target:  5'- gCGAGGauCUGCUcaucauCCCGCauggCACCGGCUCg -3'
miRNA:   3'- -GCUCC--GGCGGu-----GGGUGg---GUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 41464 0.74 0.055631
Target:  5'- cCGAGGCCGCCugACUCGUCCGgCGGCgCg -3'
miRNA:   3'- -GCUCCGGCGG--UGGGUGGGUgGCCGgG- -5'
27998 5' -65.7 NC_005887.1 + 40766 1.1 6.3e-05
Target:  5'- uCGAGGCCGCCACCCACCCACCGGCCCa -3'
miRNA:   3'- -GCUCCGGCGGUGGGUGGGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 40732 0.76 0.03769
Target:  5'- uCGAGGUCGCCGCCCGCgucgaggcgaucgCCGuuGGCgCg -3'
miRNA:   3'- -GCUCCGGCGGUGGGUG-------------GGUggCCGgG- -5'
27998 5' -65.7 NC_005887.1 + 40395 0.68 0.153126
Target:  5'- --cGGCCGCCggguucacgACCCACCgauCGCCGucacgcaugacgccGCCCg -3'
miRNA:   3'- gcuCCGGCGG---------UGGGUGG---GUGGC--------------CGGG- -5'
27998 5' -65.7 NC_005887.1 + 40131 0.68 0.142717
Target:  5'- cCGAccGGaugCGCCAgCCGCCCAUCGGUUUg -3'
miRNA:   3'- -GCU--CCg--GCGGUgGGUGGGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 40039 0.67 0.184789
Target:  5'- uCGAGGCgGCCgGCCUacGCCCgauACCGuuCCg -3'
miRNA:   3'- -GCUCCGgCGG-UGGG--UGGG---UGGCcgGG- -5'
27998 5' -65.7 NC_005887.1 + 39656 0.66 0.22824
Target:  5'- --cGGCCGCUugCCGCCCguacgcuucacgcgcACCaGGUgCu -3'
miRNA:   3'- gcuCCGGCGGugGGUGGG---------------UGG-CCGgG- -5'
27998 5' -65.7 NC_005887.1 + 38305 0.69 0.135428
Target:  5'- aGGGuGCCGUCGCCguUgucgaUCACCGGCUCa -3'
miRNA:   3'- gCUC-CGGCGGUGGguG-----GGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 36940 0.74 0.054123
Target:  5'- gGucGCUGCgGCgCCGCCCGCCGGUUCa -3'
miRNA:   3'- gCucCGGCGgUG-GGUGGGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 36298 0.67 0.17558
Target:  5'- uGAGuGCCG-CGCCgCugCCACCaGCaCCa -3'
miRNA:   3'- gCUC-CGGCgGUGG-GugGGUGGcCG-GG- -5'
27998 5' -65.7 NC_005887.1 + 35736 0.71 0.093306
Target:  5'- uCGcGGUCGUgGCCCACUCGCuCGGCUUc -3'
miRNA:   3'- -GCuCCGGCGgUGGGUGGGUG-GCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 34733 0.72 0.081521
Target:  5'- aCGGGcagcaGUCGCCGCCCAUCgaucaACCGGCgCCg -3'
miRNA:   3'- -GCUC-----CGGCGGUGGGUGGg----UGGCCG-GG- -5'
27998 5' -65.7 NC_005887.1 + 34648 0.7 0.118681
Target:  5'- aCGAGGCgCGCCGgCUugCCGguuuCCGGaUCCg -3'
miRNA:   3'- -GCUCCG-GCGGUgGGugGGU----GGCC-GGG- -5'
27998 5' -65.7 NC_005887.1 + 34149 0.66 0.204491
Target:  5'- aGAgGGCCGaCUugCCagaGCCgACaGGCCCg -3'
miRNA:   3'- gCU-CCGGC-GGugGG---UGGgUGgCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 32553 0.68 0.150363
Target:  5'- -cGGGCCcaaUCACCCACUCAUC-GCCCg -3'
miRNA:   3'- gcUCCGGc--GGUGGGUGGGUGGcCGGG- -5'
27998 5' -65.7 NC_005887.1 + 31772 0.67 0.184789
Target:  5'- uCGucGgaGUCGCCCACCCugCGaGCCa -3'
miRNA:   3'- -GCucCggCGGUGGGUGGGugGC-CGGg -5'
27998 5' -65.7 NC_005887.1 + 30581 0.73 0.067388
Target:  5'- gCGAGGaCGCCGCCgAgauCCCACCGGUg- -3'
miRNA:   3'- -GCUCCgGCGGUGGgU---GGGUGGCCGgg -5'
27998 5' -65.7 NC_005887.1 + 30537 0.71 0.08841
Target:  5'- -cAGGCCGCCGCCUGCCUuagcguacgaACCGacGCCg -3'
miRNA:   3'- gcUCCGGCGGUGGGUGGG----------UGGC--CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.