miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27998 5' -65.7 NC_005887.1 + 29277 0.68 0.146495
Target:  5'- uCGAGcGCCGCguUCCACggAUCGGCCUu -3'
miRNA:   3'- -GCUC-CGGCGguGGGUGggUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 28948 0.73 0.062082
Target:  5'- gCGGcuuGCCGCCGacgUCCGCCgCGCCGGCCUu -3'
miRNA:   3'- -GCUc--CGGCGGU---GGGUGG-GUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 28735 0.67 0.17113
Target:  5'- --cGGCCGCCGCgCGCCgCGCU-GCCa -3'
miRNA:   3'- gcuCCGGCGGUGgGUGG-GUGGcCGGg -5'
27998 5' -65.7 NC_005887.1 + 28660 0.67 0.170252
Target:  5'- --uGGCCGCCcguggucgagauCCCACCCGUCGcGCCg -3'
miRNA:   3'- gcuCCGGCGGu-----------GGGUGGGUGGC-CGGg -5'
27998 5' -65.7 NC_005887.1 + 28140 0.69 0.135428
Target:  5'- gCGcGG-CGCCGCCCugUCcgagGCCGcGCCCg -3'
miRNA:   3'- -GCuCCgGCGGUGGGugGG----UGGC-CGGG- -5'
27998 5' -65.7 NC_005887.1 + 27642 0.71 0.083759
Target:  5'- gCGAucGCCGCgCccgGCCCGCCCGCCGcgacgaGCCCg -3'
miRNA:   3'- -GCUc-CGGCG-G---UGGGUGGGUGGC------CGGG- -5'
27998 5' -65.7 NC_005887.1 + 27356 0.71 0.095849
Target:  5'- gGGcGGCaCGCCugCgGCCUGCgCGGCCUg -3'
miRNA:   3'- gCU-CCG-GCGGugGgUGGGUG-GCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 26928 0.69 0.131913
Target:  5'- --uGGCCGCCGUCgacgaACCCuGCUGGCCCc -3'
miRNA:   3'- gcuCCGGCGGUGGg----UGGG-UGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 26238 0.66 0.209693
Target:  5'- gCGcGGCgcagCGCCACCgGaaagcguuucaCCACCGGCCa -3'
miRNA:   3'- -GCuCCG----GCGGUGGgUg----------GGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 25849 0.66 0.225988
Target:  5'- gCGAucGGCCugcgacaucGCCgACCaGCCCGCCGGaUCCu -3'
miRNA:   3'- -GCU--CCGG---------CGG-UGGgUGGGUGGCC-GGG- -5'
27998 5' -65.7 NC_005887.1 + 25088 0.71 0.093306
Target:  5'- uGAGGCCGCCGCCgucggauuuCGCgaCCGguuguCCGGCCg -3'
miRNA:   3'- gCUCCGGCGGUGG---------GUG--GGU-----GGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 25021 0.67 0.17113
Target:  5'- --cGGCgGCCGCCgGCCaGCCGGUa- -3'
miRNA:   3'- gcuCCGgCGGUGGgUGGgUGGCCGgg -5'
27998 5' -65.7 NC_005887.1 + 24507 0.7 0.106693
Target:  5'- gCGAGGuuGUCGgugcCCCACCgAUUGaGCCCg -3'
miRNA:   3'- -GCUCCggCGGU----GGGUGGgUGGC-CGGG- -5'
27998 5' -65.7 NC_005887.1 + 23809 0.72 0.073131
Target:  5'- cCGGcGCCGCCGCCCACCgAgaacgcCCGuGUCCa -3'
miRNA:   3'- -GCUcCGGCGGUGGGUGGgU------GGC-CGGG- -5'
27998 5' -65.7 NC_005887.1 + 23544 0.72 0.081521
Target:  5'- --uGGCagcguacgcugaCGCCGCCCGCaUCGCCGGCCg -3'
miRNA:   3'- gcuCCG------------GCGGUGGGUG-GGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 23433 0.67 0.184789
Target:  5'- uCGucGCaGCCGCCCGccauCCCGCCGcuuccaccggaaGCCCg -3'
miRNA:   3'- -GCucCGgCGGUGGGU----GGGUGGC------------CGGG- -5'
27998 5' -65.7 NC_005887.1 + 21314 0.67 0.184789
Target:  5'- -cGGGCaCGCCcaccgcGCCgACCgCAUCGGCCg -3'
miRNA:   3'- gcUCCG-GCGG------UGGgUGG-GUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 19663 0.68 0.15838
Target:  5'- uCGAGGaaCGCaaCACgguugCGCCCACCGGCCg -3'
miRNA:   3'- -GCUCCg-GCG--GUGg----GUGGGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 19115 0.68 0.142717
Target:  5'- cCGAccGCCGCCGCUCGCgUGCCgucggcguGGCCCu -3'
miRNA:   3'- -GCUc-CGGCGGUGGGUGgGUGG--------CCGGG- -5'
27998 5' -65.7 NC_005887.1 + 16838 0.74 0.049833
Target:  5'- aCGAuuauGCCGCCACCCGCCgCGCCaucGUCCg -3'
miRNA:   3'- -GCUc---CGGCGGUGGGUGG-GUGGc--CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.