Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27998 | 5' | -65.7 | NC_005887.1 | + | 13471 | 0.69 | 0.128483 |
Target: 5'- uCGAcGGUCGCUACCCcgaUUACCGGCgCa -3' miRNA: 3'- -GCU-CCGGCGGUGGGug-GGUGGCCGgG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 14820 | 0.7 | 0.103879 |
Target: 5'- gGAGcGCCGCCcaugaCCGCCCGCCGcguauucacGCCa -3' miRNA: 3'- gCUC-CGGCGGug---GGUGGGUGGC---------CGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 16399 | 0.68 | 0.166781 |
Target: 5'- aGAcGGCCGCCGgCCggaaGCUCACgcaGGCCg -3' miRNA: 3'- gCU-CCGGCGGUgGG----UGGGUGg--CCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 16512 | 0.66 | 0.215009 |
Target: 5'- uCGcAGGCCGaUCGCgUCG-CCGCCGGCgCCg -3' miRNA: 3'- -GC-UCCGGC-GGUG-GGUgGGUGGCCG-GG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 16838 | 0.74 | 0.049833 |
Target: 5'- aCGAuuauGCCGCCACCCGCCgCGCCaucGUCCg -3' miRNA: 3'- -GCUc---CGGCGGUGGGUGG-GUGGc--CGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 19115 | 0.68 | 0.142717 |
Target: 5'- cCGAccGCCGCCGCUCGCgUGCCgucggcguGGCCCu -3' miRNA: 3'- -GCUc-CGGCGGUGGGUGgGUGG--------CCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 19663 | 0.68 | 0.15838 |
Target: 5'- uCGAGGaaCGCaaCACgguugCGCCCACCGGCCg -3' miRNA: 3'- -GCUCCg-GCG--GUGg----GUGGGUGGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 21314 | 0.67 | 0.184789 |
Target: 5'- -cGGGCaCGCCcaccgcGCCgACCgCAUCGGCCg -3' miRNA: 3'- gcUCCG-GCGG------UGGgUGG-GUGGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 23433 | 0.67 | 0.184789 |
Target: 5'- uCGucGCaGCCGCCCGccauCCCGCCGcuuccaccggaaGCCCg -3' miRNA: 3'- -GCucCGgCGGUGGGU----GGGUGGC------------CGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 23544 | 0.72 | 0.081521 |
Target: 5'- --uGGCagcguacgcugaCGCCGCCCGCaUCGCCGGCCg -3' miRNA: 3'- gcuCCG------------GCGGUGGGUG-GGUGGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 23809 | 0.72 | 0.073131 |
Target: 5'- cCGGcGCCGCCGCCCACCgAgaacgcCCGuGUCCa -3' miRNA: 3'- -GCUcCGGCGGUGGGUGGgU------GGC-CGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 24507 | 0.7 | 0.106693 |
Target: 5'- gCGAGGuuGUCGgugcCCCACCgAUUGaGCCCg -3' miRNA: 3'- -GCUCCggCGGU----GGGUGGgUGGC-CGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 25021 | 0.67 | 0.17113 |
Target: 5'- --cGGCgGCCGCCgGCCaGCCGGUa- -3' miRNA: 3'- gcuCCGgCGGUGGgUGGgUGGCCGgg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 25088 | 0.71 | 0.093306 |
Target: 5'- uGAGGCCGCCGCCgucggauuuCGCgaCCGguuguCCGGCCg -3' miRNA: 3'- gCUCCGGCGGUGG---------GUG--GGU-----GGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 25849 | 0.66 | 0.225988 |
Target: 5'- gCGAucGGCCugcgacaucGCCgACCaGCCCGCCGGaUCCu -3' miRNA: 3'- -GCU--CCGG---------CGG-UGGgUGGGUGGCC-GGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 26238 | 0.66 | 0.209693 |
Target: 5'- gCGcGGCgcagCGCCACCgGaaagcguuucaCCACCGGCCa -3' miRNA: 3'- -GCuCCG----GCGGUGGgUg----------GGUGGCCGGg -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 26928 | 0.69 | 0.131913 |
Target: 5'- --uGGCCGCCGUCgacgaACCCuGCUGGCCCc -3' miRNA: 3'- gcuCCGGCGGUGGg----UGGG-UGGCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 27356 | 0.71 | 0.095849 |
Target: 5'- gGGcGGCaCGCCugCgGCCUGCgCGGCCUg -3' miRNA: 3'- gCU-CCG-GCGGugGgUGGGUG-GCCGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 27642 | 0.71 | 0.083759 |
Target: 5'- gCGAucGCCGCgCccgGCCCGCCCGCCGcgacgaGCCCg -3' miRNA: 3'- -GCUc-CGGCG-G---UGGGUGGGUGGC------CGGG- -5' |
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27998 | 5' | -65.7 | NC_005887.1 | + | 28140 | 0.69 | 0.135428 |
Target: 5'- gCGcGG-CGCCGCCCugUCcgagGCCGcGCCCg -3' miRNA: 3'- -GCuCCgGCGGUGGGugGG----UGGC-CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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