miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27998 5' -65.7 NC_005887.1 + 25088 0.71 0.093306
Target:  5'- uGAGGCCGCCGCCgucggauuuCGCgaCCGguuguCCGGCCg -3'
miRNA:   3'- gCUCCGGCGGUGG---------GUG--GGU-----GGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 34648 0.7 0.118681
Target:  5'- aCGAGGCgCGCCGgCUugCCGguuuCCGGaUCCg -3'
miRNA:   3'- -GCUCCG-GCGGUgGGugGGU----GGCC-GGG- -5'
27998 5' -65.7 NC_005887.1 + 26928 0.69 0.131913
Target:  5'- --uGGCCGCCGUCgacgaACCCuGCUGGCCCc -3'
miRNA:   3'- gcuCCGGCGGUGGg----UGGG-UGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 38305 0.69 0.135428
Target:  5'- aGGGuGCCGUCGCCguUgucgaUCACCGGCUCa -3'
miRNA:   3'- gCUC-CGGCGGUGGguG-----GGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 28660 0.67 0.170252
Target:  5'- --uGGCCGCCcguggucgagauCCCACCCGUCGcGCCg -3'
miRNA:   3'- gcuCCGGCGGu-----------GGGUGGGUGGC-CGGg -5'
27998 5' -65.7 NC_005887.1 + 19663 0.68 0.15838
Target:  5'- uCGAGGaaCGCaaCACgguugCGCCCACCGGCCg -3'
miRNA:   3'- -GCUCCg-GCG--GUGg----GUGGGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 10738 0.68 0.15797
Target:  5'- aGuGGCgGCCaguugaACCCGgcacauuCCCGCUGGCUCa -3'
miRNA:   3'- gCuCCGgCGG------UGGGU-------GGGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 40395 0.68 0.153126
Target:  5'- --cGGCCGCCggguucacgACCCACCgauCGCCGucacgcaugacgccGCCCg -3'
miRNA:   3'- gcuCCGGCGG---------UGGGUGG---GUGGC--------------CGGG- -5'
27998 5' -65.7 NC_005887.1 + 12535 0.68 0.150363
Target:  5'- uGGcGCCGCgcaCACCCGCagacuuccagCUACUGGCCCg -3'
miRNA:   3'- gCUcCGGCG---GUGGGUG----------GGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 32553 0.68 0.150363
Target:  5'- -cGGGCCcaaUCACCCACUCAUC-GCCCg -3'
miRNA:   3'- gcUCCGGc--GGUGGGUGGGUGGcCGGG- -5'
27998 5' -65.7 NC_005887.1 + 29277 0.68 0.146495
Target:  5'- uCGAGcGCCGCguUCCACggAUCGGCCUu -3'
miRNA:   3'- -GCUC-CGGCGguGGGUGggUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 28735 0.67 0.17113
Target:  5'- --cGGCCGCCGCgCGCCgCGCU-GCCa -3'
miRNA:   3'- gcuCCGGCGGUGgGUGG-GUGGcCGGg -5'
27998 5' -65.7 NC_005887.1 + 36298 0.67 0.17558
Target:  5'- uGAGuGCCG-CGCCgCugCCACCaGCaCCa -3'
miRNA:   3'- gCUC-CGGCgGUGG-GugGGUGGcCG-GG- -5'
27998 5' -65.7 NC_005887.1 + 5259 0.67 0.180132
Target:  5'- cCGAGGCUG-UGCUCGCCCGCuuCGGUgCg -3'
miRNA:   3'- -GCUCCGGCgGUGGGUGGGUG--GCCGgG- -5'
27998 5' -65.7 NC_005887.1 + 26238 0.66 0.209693
Target:  5'- gCGcGGCgcagCGCCACCgGaaagcguuucaCCACCGGCCa -3'
miRNA:   3'- -GCuCCG----GCGGUGGgUg----------GGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 11880 0.66 0.209693
Target:  5'- -cGGGCCGCgucgCGCaCCGCCUguuCCaGCCCg -3'
miRNA:   3'- gcUCCGGCG----GUG-GGUGGGu--GGcCGGG- -5'
27998 5' -65.7 NC_005887.1 + 8963 0.66 0.215009
Target:  5'- gCGAuGaGCC-UCAUCCuGCCCGCCGGCgCg -3'
miRNA:   3'- -GCU-C-CGGcGGUGGG-UGGGUGGCCGgG- -5'
27998 5' -65.7 NC_005887.1 + 25849 0.66 0.225988
Target:  5'- gCGAucGGCCugcgacaucGCCgACCaGCCCGCCGGaUCCu -3'
miRNA:   3'- -GCU--CCGG---------CGG-UGGgUGGGUGGCC-GGG- -5'
27998 5' -65.7 NC_005887.1 + 39656 0.66 0.22824
Target:  5'- --cGGCCGCUugCCGCCCguacgcuucacgcgcACCaGGUgCu -3'
miRNA:   3'- gcuCCGGCGGugGGUGGG---------------UGG-CCGgG- -5'
27998 5' -65.7 NC_005887.1 + 40766 1.1 0.000063
Target:  5'- uCGAGGCCGCCACCCACCCACCGGCCCa -3'
miRNA:   3'- -GCUCCGGCGGUGGGUGGGUGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.