miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27998 5' -65.7 NC_005887.1 + 25088 0.71 0.093306
Target:  5'- uGAGGCCGCCGCCgucggauuuCGCgaCCGguuguCCGGCCg -3'
miRNA:   3'- gCUCCGGCGGUGG---------GUG--GGU-----GGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 34648 0.7 0.118681
Target:  5'- aCGAGGCgCGCCGgCUugCCGguuuCCGGaUCCg -3'
miRNA:   3'- -GCUCCG-GCGGUgGGugGGU----GGCC-GGG- -5'
27998 5' -65.7 NC_005887.1 + 26928 0.69 0.131913
Target:  5'- --uGGCCGCCGUCgacgaACCCuGCUGGCCCc -3'
miRNA:   3'- gcuCCGGCGGUGGg----UGGG-UGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 38305 0.69 0.135428
Target:  5'- aGGGuGCCGUCGCCguUgucgaUCACCGGCUCa -3'
miRNA:   3'- gCUC-CGGCGGUGGguG-----GGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 13471 0.69 0.128483
Target:  5'- uCGAcGGUCGCUACCCcgaUUACCGGCgCa -3'
miRNA:   3'- -GCU-CCGGCGGUGGGug-GGUGGCCGgG- -5'
27998 5' -65.7 NC_005887.1 + 10658 0.69 0.121868
Target:  5'- cCGAGGUucUGCCgACgaACCaGCCGGCCCg -3'
miRNA:   3'- -GCUCCG--GCGG-UGggUGGgUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 2953 0.69 0.121868
Target:  5'- aCGcGGUCGCgACCacgguuGCgCCGCCGGCCUc -3'
miRNA:   3'- -GCuCCGGCGgUGGg-----UG-GGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 12860 0.7 0.103879
Target:  5'- uCGAGGCCGCCGgCUACgaCAUCGuGCUg -3'
miRNA:   3'- -GCUCCGGCGGUgGGUGg-GUGGC-CGGg -5'
27998 5' -65.7 NC_005887.1 + 24507 0.7 0.106693
Target:  5'- gCGAGGuuGUCGgugcCCCACCgAUUGaGCCCg -3'
miRNA:   3'- -GCUCCggCGGU----GGGUGGgUGGC-CGGG- -5'
27998 5' -65.7 NC_005887.1 + 14820 0.7 0.103879
Target:  5'- gGAGcGCCGCCcaugaCCGCCCGCCGcguauucacGCCa -3'
miRNA:   3'- gCUC-CGGCGGug---GGUGGGUGGC---------CGGg -5'
27998 5' -65.7 NC_005887.1 + 754 0.71 0.098458
Target:  5'- --cGGCCGCCGCaCCugggcCgCCGCUGGCCg -3'
miRNA:   3'- gcuCCGGCGGUG-GGu----G-GGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 27356 0.71 0.095849
Target:  5'- gGGcGGCaCGCCugCgGCCUGCgCGGCCUg -3'
miRNA:   3'- gCU-CCG-GCGGugGgUGGGUG-GCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 30537 0.71 0.08841
Target:  5'- -cAGGCCGCCGCCUGCCUuagcguacgaACCGacGCCg -3'
miRNA:   3'- gcUCCGGCGGUGGGUGGG----------UGGC--CGGg -5'
27998 5' -65.7 NC_005887.1 + 27642 0.71 0.083759
Target:  5'- gCGAucGCCGCgCccgGCCCGCCCGCCGcgacgaGCCCg -3'
miRNA:   3'- -GCUc-CGGCG-G---UGGGUGGGUGGC------CGGG- -5'
27998 5' -65.7 NC_005887.1 + 34733 0.72 0.081521
Target:  5'- aCGGGcagcaGUCGCCGCCCAUCgaucaACCGGCgCCg -3'
miRNA:   3'- -GCUC-----CGGCGGUGGGUGGg----UGGCCG-GG- -5'
27998 5' -65.7 NC_005887.1 + 23809 0.72 0.073131
Target:  5'- cCGGcGCCGCCGCCCACCgAgaacgcCCGuGUCCa -3'
miRNA:   3'- -GCUcCGGCGGUGGGUGGgU------GGC-CGGG- -5'
27998 5' -65.7 NC_005887.1 + 9923 0.72 0.071166
Target:  5'- uGAucGCCGCCGgCCACaucgCCGCCGGCCa -3'
miRNA:   3'- gCUc-CGGCGGUgGGUG----GGUGGCCGGg -5'
27998 5' -65.7 NC_005887.1 + 1559 0.72 0.071166
Target:  5'- gCGucGCCGCCACgaaCCucgaCCGCCGGCUCg -3'
miRNA:   3'- -GCucCGGCGGUG---GGug--GGUGGCCGGG- -5'
27998 5' -65.7 NC_005887.1 + 30581 0.73 0.067388
Target:  5'- gCGAGGaCGCCGCCgAgauCCCACCGGUg- -3'
miRNA:   3'- -GCUCCgGCGGUGGgU---GGGUGGCCGgg -5'
27998 5' -65.7 NC_005887.1 + 28948 0.73 0.062082
Target:  5'- gCGGcuuGCCGCCGacgUCCGCCgCGCCGGCCUu -3'
miRNA:   3'- -GCUc--CGGCGGU---GGGUGG-GUGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.