miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28001 3' -54.7 NC_005887.1 + 10989 0.72 0.276132
Target:  5'- cGCUCGucgagGAUGGCguggUGCucgGGUGCGGCGGu -3'
miRNA:   3'- -CGAGC-----UUGCCGa---ACG---UCACGUCGCUu -5'
28001 3' -54.7 NC_005887.1 + 37452 0.73 0.248199
Target:  5'- cGCUUGccugcGCGGUUUGCAGUGCGcCGGAu -3'
miRNA:   3'- -CGAGCu----UGCCGAACGUCACGUcGCUU- -5'
28001 3' -54.7 NC_005887.1 + 14697 0.73 0.261863
Target:  5'- gGCUCGucGCGGCggGCGGgccgggcGCGGCGAu -3'
miRNA:   3'- -CGAGCu-UGCCGaaCGUCa------CGUCGCUu -5'
28001 3' -54.7 NC_005887.1 + 11300 0.74 0.235131
Target:  5'- uGCUCGcAGCGGCcgGCucgGCAGCGAGc -3'
miRNA:   3'- -CGAGC-UUGCCGaaCGucaCGUCGCUU- -5'
28001 3' -54.7 NC_005887.1 + 40232 1.08 0.000743
Target:  5'- aGCUCGAACGGCUUGCAGUGCAGCGAAu -3'
miRNA:   3'- -CGAGCUUGCCGAACGUCACGUCGCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.