miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28001 3' -54.7 NC_005887.1 + 39024 0.69 0.422359
Target:  5'- -gUCGAcgGCGGCUUGCugcggAGU-CAGCGAAc -3'
miRNA:   3'- cgAGCU--UGCCGAACG-----UCAcGUCGCUU- -5'
28001 3' -54.7 NC_005887.1 + 40232 1.08 0.000743
Target:  5'- aGCUCGAACGGCUUGCAGUGCAGCGAAu -3'
miRNA:   3'- -CGAGCUUGCCGAACGUCACGUCGCUU- -5'
28001 3' -54.7 NC_005887.1 + 40736 0.66 0.64061
Target:  5'- aGCUCGAAUGaCagGUAGUGCguuGGCGGu -3'
miRNA:   3'- -CGAGCUUGCcGaaCGUCACG---UCGCUu -5'
28001 3' -54.7 NC_005887.1 + 41005 0.69 0.432304
Target:  5'- cGCUCGAgcgucucgcccuGCGGCUUGUAGUGgAauuCGAu -3'
miRNA:   3'- -CGAGCU------------UGCCGAACGUCACgUc--GCUu -5'
28001 3' -54.7 NC_005887.1 + 41504 0.69 0.462936
Target:  5'- gGCUCGAACGGCaaGUcgacGGUGCucGGCa-- -3'
miRNA:   3'- -CGAGCUUGCCGaaCG----UCACG--UCGcuu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.