miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28004 5' -57.7 NC_005887.1 + 9279 0.67 0.439237
Target:  5'- gCGGUCGgcaCGGCGaCGCCgcagguuacGGGCaCCGAAa -3'
miRNA:   3'- -GCUAGUa--GUCGC-GCGG---------UCCG-GGCUUg -5'
28004 5' -57.7 NC_005887.1 + 17881 0.67 0.429527
Target:  5'- aCGA-CAcgaUCGGcCGCGCCAacGGCCUGAu- -3'
miRNA:   3'- -GCUaGU---AGUC-GCGCGGU--CCGGGCUug -5'
28004 5' -57.7 NC_005887.1 + 32794 0.67 0.428563
Target:  5'- gGAUCGgc-GCGCGCCgcuucacGGGCaCGAACa -3'
miRNA:   3'- gCUAGUaguCGCGCGG-------UCCGgGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 19366 0.67 0.419946
Target:  5'- uCGAUCAgCGGCaacGCGCCAuGCUCGcGCa -3'
miRNA:   3'- -GCUAGUaGUCG---CGCGGUcCGGGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 21948 0.67 0.419946
Target:  5'- aGA-UAUUAccccCGCGCCGGGCCUGAAa -3'
miRNA:   3'- gCUaGUAGUc---GCGCGGUCCGGGCUUg -5'
28004 5' -57.7 NC_005887.1 + 28831 0.67 0.410494
Target:  5'- gCGAUCGU-GGCGCGCau-GCCCGuGCc -3'
miRNA:   3'- -GCUAGUAgUCGCGCGgucCGGGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 27918 0.67 0.410494
Target:  5'- uCGAUCgcgGUUGcGCGCGUCGGGUCCgcuuGAACg -3'
miRNA:   3'- -GCUAG---UAGU-CGCGCGGUCCGGG----CUUG- -5'
28004 5' -57.7 NC_005887.1 + 17438 0.68 0.401176
Target:  5'- gCGcUCGUCgAGCGCuaC-GGCCCGAAUc -3'
miRNA:   3'- -GCuAGUAG-UCGCGcgGuCCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 34379 0.68 0.401176
Target:  5'- gCGuAUCAgagugCGGCcggGCGCgAGGCCCGGccuGCa -3'
miRNA:   3'- -GC-UAGUa----GUCG---CGCGgUCCGGGCU---UG- -5'
28004 5' -57.7 NC_005887.1 + 16013 0.68 0.401176
Target:  5'- uCGcgCAcccggcCAGCGCcgGCCAcGGCCUGAACc -3'
miRNA:   3'- -GCuaGUa-----GUCGCG--CGGU-CCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 12589 0.68 0.401176
Target:  5'- gCGAUCcucgcgAUCAGCuCGCCGGGCaagaCCGuGCa -3'
miRNA:   3'- -GCUAG------UAGUCGcGCGGUCCG----GGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 13537 0.68 0.374045
Target:  5'- aCGAUCGcgaaugcgaUCGGCgauGCGCUgccGCCCGAGCa -3'
miRNA:   3'- -GCUAGU---------AGUCG---CGCGGuc-CGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 18236 0.68 0.374045
Target:  5'- uGAUCGccUCGGCcaCGCCGGGCaCCGucACg -3'
miRNA:   3'- gCUAGU--AGUCGc-GCGGUCCG-GGCu-UG- -5'
28004 5' -57.7 NC_005887.1 + 11377 0.68 0.365282
Target:  5'- gCGggCGUCAGCGCaGCCGGaGCgCUGGc- -3'
miRNA:   3'- -GCuaGUAGUCGCG-CGGUC-CG-GGCUug -5'
28004 5' -57.7 NC_005887.1 + 18399 0.68 0.365282
Target:  5'- aGGUCGUCGGUGCGUgcgCAgacGGCCgCGAGg -3'
miRNA:   3'- gCUAGUAGUCGCGCG---GU---CCGG-GCUUg -5'
28004 5' -57.7 NC_005887.1 + 40169 0.68 0.356662
Target:  5'- cCGAUCAccgCGGCcgGCGUCAGG-CCGAAg -3'
miRNA:   3'- -GCUAGUa--GUCG--CGCGGUCCgGGCUUg -5'
28004 5' -57.7 NC_005887.1 + 30438 0.69 0.339854
Target:  5'- cCGA-CGUCGGgGCggggcauguuGCCGGGCUgGAACa -3'
miRNA:   3'- -GCUaGUAGUCgCG----------CGGUCCGGgCUUG- -5'
28004 5' -57.7 NC_005887.1 + 20532 0.69 0.331668
Target:  5'- --uUCAuUCGGCGCGCCcggcAGcGCCgCGGACg -3'
miRNA:   3'- gcuAGU-AGUCGCGCGG----UC-CGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 18876 0.69 0.331668
Target:  5'- aGAUCAagGGCGuCGCC-GGCugCCGGGCu -3'
miRNA:   3'- gCUAGUagUCGC-GCGGuCCG--GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 40755 0.69 0.323627
Target:  5'- gCGAUCgccGUUGGCGCGCCGcGCgccgCCGAGCc -3'
miRNA:   3'- -GCUAG---UAGUCGCGCGGUcCG----GGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.