miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28004 5' -57.7 NC_005887.1 + 16153 0.66 0.479275
Target:  5'- ---cCAcCGGCGCGCCgAGuGCgCGAGCg -3'
miRNA:   3'- gcuaGUaGUCGCGCGG-UC-CGgGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 17438 0.68 0.401176
Target:  5'- gCGcUCGUCgAGCGCuaC-GGCCCGAAUc -3'
miRNA:   3'- -GCuAGUAG-UCGCGcgGuCCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 17799 0.66 0.499955
Target:  5'- gCGAUCAUgGGCGCccgGCCgaAGGUgCGGccGCg -3'
miRNA:   3'- -GCUAGUAgUCGCG---CGG--UCCGgGCU--UG- -5'
28004 5' -57.7 NC_005887.1 + 17881 0.67 0.429527
Target:  5'- aCGA-CAcgaUCGGcCGCGCCAacGGCCUGAu- -3'
miRNA:   3'- -GCUaGU---AGUC-GCGCGGU--CCGGGCUug -5'
28004 5' -57.7 NC_005887.1 + 18236 0.68 0.374045
Target:  5'- uGAUCGccUCGGCcaCGCCGGGCaCCGucACg -3'
miRNA:   3'- gCUAGU--AGUCGc-GCGGUCCG-GGCu-UG- -5'
28004 5' -57.7 NC_005887.1 + 18369 0.66 0.489564
Target:  5'- cCGcgUAgaCGGCGCGCCGGcGCUcgCGAACc -3'
miRNA:   3'- -GCuaGUa-GUCGCGCGGUC-CGG--GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 18399 0.68 0.365282
Target:  5'- aGGUCGUCGGUGCGUgcgCAgacGGCCgCGAGg -3'
miRNA:   3'- gCUAGUAGUCGCGCG---GU---CCGG-GCUUg -5'
28004 5' -57.7 NC_005887.1 + 18876 0.69 0.331668
Target:  5'- aGAUCAagGGCGuCGCC-GGCugCCGGGCu -3'
miRNA:   3'- gCUAGUagUCGC-GCGGuCCG--GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 19366 0.67 0.419946
Target:  5'- uCGAUCAgCGGCaacGCGCCAuGCUCGcGCa -3'
miRNA:   3'- -GCUAGUaGUCG---CGCGGUcCGGGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 20532 0.69 0.331668
Target:  5'- --uUCAuUCGGCGCGCCcggcAGcGCCgCGGACg -3'
miRNA:   3'- gcuAGU-AGUCGCGCGG----UC-CGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 21808 0.73 0.177625
Target:  5'- aCGAcgUCcgCGGCGCuGCCGGGCgcgCCGAAUg -3'
miRNA:   3'- -GCU--AGuaGUCGCG-CGGUCCG---GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 21948 0.67 0.419946
Target:  5'- aGA-UAUUAccccCGCGCCGGGCCUGAAa -3'
miRNA:   3'- gCUaGUAGUc---GCGCGGUCCGGGCUUg -5'
28004 5' -57.7 NC_005887.1 + 23979 0.7 0.311067
Target:  5'- gCGAgCGcCGGCGCGCCGucuacgcggaagucGCCCGAACg -3'
miRNA:   3'- -GCUaGUaGUCGCGCGGUc-------------CGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 24419 0.66 0.489564
Target:  5'- aCGAgcUCGUUcGUGCGCacgCAGGUCgCGAGCa -3'
miRNA:   3'- -GCU--AGUAGuCGCGCG---GUCCGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 26072 0.74 0.16361
Target:  5'- --cUgGUCAGCGCGUCAgcGGCCCGcGCg -3'
miRNA:   3'- gcuAgUAGUCGCGCGGU--CCGGGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 26902 0.66 0.499955
Target:  5'- gCGGUCAUCgcGGCGaCGUCGuccGGUugaCCGAACa -3'
miRNA:   3'- -GCUAGUAG--UCGC-GCGGU---CCG---GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 27132 0.67 0.459024
Target:  5'- uCGAcUCGUCGGCGaucacgcgGCCGaacGGCCaCGGGCg -3'
miRNA:   3'- -GCU-AGUAGUCGCg-------CGGU---CCGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 27252 0.66 0.469093
Target:  5'- ---gCAUC-GCGCGCC-GGCCCGc-- -3'
miRNA:   3'- gcuaGUAGuCGCGCGGuCCGGGCuug -5'
28004 5' -57.7 NC_005887.1 + 27627 0.69 0.323627
Target:  5'- uCGAUCGUCGccugcgcgaucGcCGCGCCcGGCCCGc-- -3'
miRNA:   3'- -GCUAGUAGU-----------C-GCGCGGuCCGGGCuug -5'
28004 5' -57.7 NC_005887.1 + 27918 0.67 0.410494
Target:  5'- uCGAUCgcgGUUGcGCGCGUCGGGUCCgcuuGAACg -3'
miRNA:   3'- -GCUAG---UAGU-CGCGCGGUCCGGG----CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.