Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28004 | 5' | -57.7 | NC_005887.1 | + | 16153 | 0.66 | 0.479275 |
Target: 5'- ---cCAcCGGCGCGCCgAGuGCgCGAGCg -3' miRNA: 3'- gcuaGUaGUCGCGCGG-UC-CGgGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 17438 | 0.68 | 0.401176 |
Target: 5'- gCGcUCGUCgAGCGCuaC-GGCCCGAAUc -3' miRNA: 3'- -GCuAGUAG-UCGCGcgGuCCGGGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 17799 | 0.66 | 0.499955 |
Target: 5'- gCGAUCAUgGGCGCccgGCCgaAGGUgCGGccGCg -3' miRNA: 3'- -GCUAGUAgUCGCG---CGG--UCCGgGCU--UG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 17881 | 0.67 | 0.429527 |
Target: 5'- aCGA-CAcgaUCGGcCGCGCCAacGGCCUGAu- -3' miRNA: 3'- -GCUaGU---AGUC-GCGCGGU--CCGGGCUug -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 18236 | 0.68 | 0.374045 |
Target: 5'- uGAUCGccUCGGCcaCGCCGGGCaCCGucACg -3' miRNA: 3'- gCUAGU--AGUCGc-GCGGUCCG-GGCu-UG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 18369 | 0.66 | 0.489564 |
Target: 5'- cCGcgUAgaCGGCGCGCCGGcGCUcgCGAACc -3' miRNA: 3'- -GCuaGUa-GUCGCGCGGUC-CGG--GCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 18399 | 0.68 | 0.365282 |
Target: 5'- aGGUCGUCGGUGCGUgcgCAgacGGCCgCGAGg -3' miRNA: 3'- gCUAGUAGUCGCGCG---GU---CCGG-GCUUg -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 18876 | 0.69 | 0.331668 |
Target: 5'- aGAUCAagGGCGuCGCC-GGCugCCGGGCu -3' miRNA: 3'- gCUAGUagUCGC-GCGGuCCG--GGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 19366 | 0.67 | 0.419946 |
Target: 5'- uCGAUCAgCGGCaacGCGCCAuGCUCGcGCa -3' miRNA: 3'- -GCUAGUaGUCG---CGCGGUcCGGGCuUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 20532 | 0.69 | 0.331668 |
Target: 5'- --uUCAuUCGGCGCGCCcggcAGcGCCgCGGACg -3' miRNA: 3'- gcuAGU-AGUCGCGCGG----UC-CGG-GCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 21808 | 0.73 | 0.177625 |
Target: 5'- aCGAcgUCcgCGGCGCuGCCGGGCgcgCCGAAUg -3' miRNA: 3'- -GCU--AGuaGUCGCG-CGGUCCG---GGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 21948 | 0.67 | 0.419946 |
Target: 5'- aGA-UAUUAccccCGCGCCGGGCCUGAAa -3' miRNA: 3'- gCUaGUAGUc---GCGCGGUCCGGGCUUg -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 23979 | 0.7 | 0.311067 |
Target: 5'- gCGAgCGcCGGCGCGCCGucuacgcggaagucGCCCGAACg -3' miRNA: 3'- -GCUaGUaGUCGCGCGGUc-------------CGGGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 24419 | 0.66 | 0.489564 |
Target: 5'- aCGAgcUCGUUcGUGCGCacgCAGGUCgCGAGCa -3' miRNA: 3'- -GCU--AGUAGuCGCGCG---GUCCGG-GCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 26072 | 0.74 | 0.16361 |
Target: 5'- --cUgGUCAGCGCGUCAgcGGCCCGcGCg -3' miRNA: 3'- gcuAgUAGUCGCGCGGU--CCGGGCuUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 26902 | 0.66 | 0.499955 |
Target: 5'- gCGGUCAUCgcGGCGaCGUCGuccGGUugaCCGAACa -3' miRNA: 3'- -GCUAGUAG--UCGC-GCGGU---CCG---GGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 27132 | 0.67 | 0.459024 |
Target: 5'- uCGAcUCGUCGGCGaucacgcgGCCGaacGGCCaCGGGCg -3' miRNA: 3'- -GCU-AGUAGUCGCg-------CGGU---CCGG-GCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 27252 | 0.66 | 0.469093 |
Target: 5'- ---gCAUC-GCGCGCC-GGCCCGc-- -3' miRNA: 3'- gcuaGUAGuCGCGCGGuCCGGGCuug -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 27627 | 0.69 | 0.323627 |
Target: 5'- uCGAUCGUCGccugcgcgaucGcCGCGCCcGGCCCGc-- -3' miRNA: 3'- -GCUAGUAGU-----------C-GCGCGGuCCGGGCuug -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 27918 | 0.67 | 0.410494 |
Target: 5'- uCGAUCgcgGUUGcGCGCGUCGGGUCCgcuuGAACg -3' miRNA: 3'- -GCUAG---UAGU-CGCGCGGUCCGGG----CUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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