miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28004 5' -57.7 NC_005887.1 + 13124 0.69 0.323627
Target:  5'- aGGUCGacaccUCgAGCGUGCCGGGCCuCGucuCg -3'
miRNA:   3'- gCUAGU-----AG-UCGCGCGGUCCGG-GCuu-G- -5'
28004 5' -57.7 NC_005887.1 + 40755 0.69 0.323627
Target:  5'- gCGAUCgccGUUGGCGCGCCGcGCgccgCCGAGCc -3'
miRNA:   3'- -GCUAG---UAGUCGCGCGGUcCG----GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 30438 0.69 0.339854
Target:  5'- cCGA-CGUCGGgGCggggcauguuGCCGGGCUgGAACa -3'
miRNA:   3'- -GCUaGUAGUCgCG----------CGGUCCGGgCUUG- -5'
28004 5' -57.7 NC_005887.1 + 11377 0.68 0.365282
Target:  5'- gCGggCGUCAGCGCaGCCGGaGCgCUGGc- -3'
miRNA:   3'- -GCuaGUAGUCGCG-CGGUC-CG-GGCUug -5'
28004 5' -57.7 NC_005887.1 + 18236 0.68 0.374045
Target:  5'- uGAUCGccUCGGCcaCGCCGGGCaCCGucACg -3'
miRNA:   3'- gCUAGU--AGUCGc-GCGGUCCG-GGCu-UG- -5'
28004 5' -57.7 NC_005887.1 + 13537 0.68 0.374045
Target:  5'- aCGAUCGcgaaugcgaUCGGCgauGCGCUgccGCCCGAGCa -3'
miRNA:   3'- -GCUAGU---------AGUCG---CGCGGuc-CGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 34379 0.68 0.401176
Target:  5'- gCGuAUCAgagugCGGCcggGCGCgAGGCCCGGccuGCa -3'
miRNA:   3'- -GC-UAGUa----GUCG---CGCGgUCCGGGCU---UG- -5'
28004 5' -57.7 NC_005887.1 + 12589 0.68 0.401176
Target:  5'- gCGAUCcucgcgAUCAGCuCGCCGGGCaagaCCGuGCa -3'
miRNA:   3'- -GCUAG------UAGUCGcGCGGUCCG----GGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 18399 0.68 0.365282
Target:  5'- aGGUCGUCGGUGCGUgcgCAgacGGCCgCGAGg -3'
miRNA:   3'- gCUAGUAGUCGCGCG---GU---CCGG-GCUUg -5'
28004 5' -57.7 NC_005887.1 + 40169 0.68 0.356662
Target:  5'- cCGAUCAccgCGGCcgGCGUCAGG-CCGAAg -3'
miRNA:   3'- -GCUAGUa--GUCG--CGCGGUCCgGGCUUg -5'
28004 5' -57.7 NC_005887.1 + 20532 0.69 0.331668
Target:  5'- --uUCAuUCGGCGCGCCcggcAGcGCCgCGGACg -3'
miRNA:   3'- gcuAGU-AGUCGCGCGG----UC-CGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 18876 0.69 0.331668
Target:  5'- aGAUCAagGGCGuCGCC-GGCugCCGGGCu -3'
miRNA:   3'- gCUAGUagUCGC-GCGGuCCG--GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 27627 0.69 0.323627
Target:  5'- uCGAUCGUCGccugcgcgaucGcCGCGCCcGGCCCGc-- -3'
miRNA:   3'- -GCUAGUAGU-----------C-GCGCGGuCCGGGCuug -5'
28004 5' -57.7 NC_005887.1 + 2424 0.69 0.323627
Target:  5'- -cGUCGUCGaCGCGCCcGGCUCGAucuGCg -3'
miRNA:   3'- gcUAGUAGUcGCGCGGuCCGGGCU---UG- -5'
28004 5' -57.7 NC_005887.1 + 23979 0.7 0.311067
Target:  5'- gCGAgCGcCGGCGCGCCGucuacgcggaagucGCCCGAACg -3'
miRNA:   3'- -GCUaGUaGUCGCGCGGUc-------------CGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 38638 0.7 0.307986
Target:  5'- gGAUCGcggUCGGCGCGC--GGCUCGAcgGCg -3'
miRNA:   3'- gCUAGU---AGUCGCGCGguCCGGGCU--UG- -5'
28004 5' -57.7 NC_005887.1 + 15089 0.7 0.292928
Target:  5'- cCGAUCAUUGGCGaCG-CGGGCCgGcGCg -3'
miRNA:   3'- -GCUAGUAGUCGC-GCgGUCCGGgCuUG- -5'
28004 5' -57.7 NC_005887.1 + 12419 0.7 0.278451
Target:  5'- uCGAUCccgagAUC-GUGCGCgAGGCCCGcGGCa -3'
miRNA:   3'- -GCUAG-----UAGuCGCGCGgUCCGGGC-UUG- -5'
28004 5' -57.7 NC_005887.1 + 10038 0.72 0.214526
Target:  5'- uGGUCcuacgcacugCGGCGCGCCGgcuGGCCCGAc- -3'
miRNA:   3'- gCUAGua--------GUCGCGCGGU---CCGGGCUug -5'
28004 5' -57.7 NC_005887.1 + 32123 0.8 0.058612
Target:  5'- aGGUCAUCAGaCGCGCCGuccGGCgCGGGCa -3'
miRNA:   3'- gCUAGUAGUC-GCGCGGU---CCGgGCUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.