miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28004 5' -57.7 NC_005887.1 + 10257 0.72 0.226217
Target:  5'- uGAUCGUCcGC-CGCCAGGUCaaCGGGCa -3'
miRNA:   3'- gCUAGUAGuCGcGCGGUCCGG--GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 13124 0.69 0.323627
Target:  5'- aGGUCGacaccUCgAGCGUGCCGGGCCuCGucuCg -3'
miRNA:   3'- gCUAGU-----AG-UCGCGCGGUCCGG-GCuu-G- -5'
28004 5' -57.7 NC_005887.1 + 40755 0.69 0.323627
Target:  5'- gCGAUCgccGUUGGCGCGCCGcGCgccgCCGAGCc -3'
miRNA:   3'- -GCUAG---UAGUCGCGCGGUcCG----GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 30438 0.69 0.339854
Target:  5'- cCGA-CGUCGGgGCggggcauguuGCCGGGCUgGAACa -3'
miRNA:   3'- -GCUaGUAGUCgCG----------CGGUCCGGgCUUG- -5'
28004 5' -57.7 NC_005887.1 + 11377 0.68 0.365282
Target:  5'- gCGggCGUCAGCGCaGCCGGaGCgCUGGc- -3'
miRNA:   3'- -GCuaGUAGUCGCG-CGGUC-CG-GGCUug -5'
28004 5' -57.7 NC_005887.1 + 18236 0.68 0.374045
Target:  5'- uGAUCGccUCGGCcaCGCCGGGCaCCGucACg -3'
miRNA:   3'- gCUAGU--AGUCGc-GCGGUCCG-GGCu-UG- -5'
28004 5' -57.7 NC_005887.1 + 13537 0.68 0.374045
Target:  5'- aCGAUCGcgaaugcgaUCGGCgauGCGCUgccGCCCGAGCa -3'
miRNA:   3'- -GCUAGU---------AGUCG---CGCGGuc-CGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 3786 0.67 0.44907
Target:  5'- aGAUCAUCGGUGUugucaccgGCCAGuggcGCCCGc-- -3'
miRNA:   3'- gCUAGUAGUCGCG--------CGGUC----CGGGCuug -5'
28004 5' -57.7 NC_005887.1 + 17881 0.67 0.429527
Target:  5'- aCGA-CAcgaUCGGcCGCGCCAacGGCCUGAu- -3'
miRNA:   3'- -GCUaGU---AGUC-GCGCGGU--CCGGGCUug -5'
28004 5' -57.7 NC_005887.1 + 19366 0.67 0.419946
Target:  5'- uCGAUCAgCGGCaacGCGCCAuGCUCGcGCa -3'
miRNA:   3'- -GCUAGUaGUCG---CGCGGUcCGGGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 21948 0.67 0.419946
Target:  5'- aGA-UAUUAccccCGCGCCGGGCCUGAAa -3'
miRNA:   3'- gCUaGUAGUc---GCGCGGUCCGGGCUUg -5'
28004 5' -57.7 NC_005887.1 + 28831 0.67 0.410494
Target:  5'- gCGAUCGU-GGCGCGCau-GCCCGuGCc -3'
miRNA:   3'- -GCUAGUAgUCGCGCGgucCGGGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 1703 0.67 0.44907
Target:  5'- cCGGUgAUCGGCGCGCgcucguCAGuGCCUGucuuGCc -3'
miRNA:   3'- -GCUAgUAGUCGCGCG------GUC-CGGGCu---UG- -5'
28004 5' -57.7 NC_005887.1 + 14996 0.67 0.458023
Target:  5'- cCGAcgcUCGUCuGCGCGCCGcugcgcguGGCgcagucgacguggCCGGACg -3'
miRNA:   3'- -GCU---AGUAGuCGCGCGGU--------CCG-------------GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 37198 0.66 0.479275
Target:  5'- aGcAUCAgCGGCGCGCCgacgucGGGCagcgcggucaugCCGAGCu -3'
miRNA:   3'- gC-UAGUaGUCGCGCGG------UCCG------------GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 38234 0.66 0.479275
Target:  5'- uGAUCGUCugccGCGUGUCcuGCgCGAACu -3'
miRNA:   3'- gCUAGUAGu---CGCGCGGucCGgGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 30202 0.66 0.489564
Target:  5'- gCGAUCGUCaccaaucuGGCGCGCgAcggcGGCCUGcuCg -3'
miRNA:   3'- -GCUAGUAG--------UCGCGCGgU----CCGGGCuuG- -5'
28004 5' -57.7 NC_005887.1 + 17799 0.66 0.499955
Target:  5'- gCGAUCAUgGGCGCccgGCCgaAGGUgCGGccGCg -3'
miRNA:   3'- -GCUAGUAgUCGCG---CGG--UCCGgGCU--UG- -5'
28004 5' -57.7 NC_005887.1 + 26902 0.66 0.499955
Target:  5'- gCGGUCAUCgcGGCGaCGUCGuccGGUugaCCGAACa -3'
miRNA:   3'- -GCUAGUAG--UCGC-GCGGU---CCG---GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 38878 1.1 0.000339
Target:  5'- uCGAUCAUCAGCGCGCCAGGCCCGAACa -3'
miRNA:   3'- -GCUAGUAGUCGCGCGGUCCGGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.