miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28004 5' -57.7 NC_005887.1 + 18399 0.68 0.365282
Target:  5'- aGGUCGUCGGUGCGUgcgCAgacGGCCgCGAGg -3'
miRNA:   3'- gCUAGUAGUCGCGCG---GU---CCGG-GCUUg -5'
28004 5' -57.7 NC_005887.1 + 38638 0.7 0.307986
Target:  5'- gGAUCGcggUCGGCGCGC--GGCUCGAcgGCg -3'
miRNA:   3'- gCUAGU---AGUCGCGCGguCCGGGCU--UG- -5'
28004 5' -57.7 NC_005887.1 + 32123 0.8 0.058612
Target:  5'- aGGUCAUCAGaCGCGCCGuccGGCgCGGGCa -3'
miRNA:   3'- gCUAGUAGUC-GCGCGGU---CCGgGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 40169 0.68 0.356662
Target:  5'- cCGAUCAccgCGGCcgGCGUCAGG-CCGAAg -3'
miRNA:   3'- -GCUAGUa--GUCG--CGCGGUCCgGGCUUg -5'
28004 5' -57.7 NC_005887.1 + 27627 0.69 0.323627
Target:  5'- uCGAUCGUCGccugcgcgaucGcCGCGCCcGGCCCGc-- -3'
miRNA:   3'- -GCUAGUAGU-----------C-GCGCGGuCCGGGCuug -5'
28004 5' -57.7 NC_005887.1 + 15089 0.7 0.292928
Target:  5'- cCGAUCAUUGGCGaCG-CGGGCCgGcGCg -3'
miRNA:   3'- -GCUAGUAGUCGC-GCgGUCCGGgCuUG- -5'
28004 5' -57.7 NC_005887.1 + 16013 0.68 0.401176
Target:  5'- uCGcgCAcccggcCAGCGCcgGCCAcGGCCUGAACc -3'
miRNA:   3'- -GCuaGUa-----GUCGCG--CGGU-CCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 18876 0.69 0.331668
Target:  5'- aGAUCAagGGCGuCGCC-GGCugCCGGGCu -3'
miRNA:   3'- gCUAGUagUCGC-GCGGuCCG--GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 20532 0.69 0.331668
Target:  5'- --uUCAuUCGGCGCGCCcggcAGcGCCgCGGACg -3'
miRNA:   3'- gcuAGU-AGUCGCGCGG----UC-CGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 17438 0.68 0.401176
Target:  5'- gCGcUCGUCgAGCGCuaC-GGCCCGAAUc -3'
miRNA:   3'- -GCuAGUAG-UCGCGcgGuCCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 14348 0.74 0.16361
Target:  5'- gCGAUCGUgaagCAGCGUGCCGGGCaCCu--- -3'
miRNA:   3'- -GCUAGUA----GUCGCGCGGUCCG-GGcuug -5'
28004 5' -57.7 NC_005887.1 + 32794 0.67 0.428563
Target:  5'- gGAUCGgc-GCGCGCCgcuucacGGGCaCGAACa -3'
miRNA:   3'- gCUAGUaguCGCGCGG-------UCCGgGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 35334 0.66 0.489564
Target:  5'- gCGcgCcgCGGCG-GCC-GGCCaCGAGCu -3'
miRNA:   3'- -GCuaGuaGUCGCgCGGuCCGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 13124 0.69 0.323627
Target:  5'- aGGUCGacaccUCgAGCGUGCCGGGCCuCGucuCg -3'
miRNA:   3'- gCUAGU-----AG-UCGCGCGGUCCGG-GCuu-G- -5'
28004 5' -57.7 NC_005887.1 + 18369 0.66 0.489564
Target:  5'- cCGcgUAgaCGGCGCGCCGGcGCUcgCGAACc -3'
miRNA:   3'- -GCuaGUa-GUCGCGCGGUC-CGG--GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 24419 0.66 0.489564
Target:  5'- aCGAgcUCGUUcGUGCGCacgCAGGUCgCGAGCa -3'
miRNA:   3'- -GCU--AGUAGuCGCGCG---GUCCGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 14993 0.66 0.521021
Target:  5'- cCGcgCAggccgcaGGCGUGCC--GCCCGAGCu -3'
miRNA:   3'- -GCuaGUag-----UCGCGCGGucCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 10257 0.72 0.226217
Target:  5'- uGAUCGUCcGC-CGCCAGGUCaaCGGGCa -3'
miRNA:   3'- gCUAGUAGuCGcGCGGUCCGG--GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 32028 0.66 0.521021
Target:  5'- uCGAUC-UCGGaUGUGCgGGGCaCCGAc- -3'
miRNA:   3'- -GCUAGuAGUC-GCGCGgUCCG-GGCUug -5'
28004 5' -57.7 NC_005887.1 + 34379 0.68 0.401176
Target:  5'- gCGuAUCAgagugCGGCcggGCGCgAGGCCCGGccuGCa -3'
miRNA:   3'- -GC-UAGUa----GUCG---CGCGgUCCGGGCU---UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.