miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28004 5' -57.7 NC_005887.1 + 1955 0.66 0.510443
Target:  5'- ---aCGUCGGcCGUGCCGGGCaucaCGAu- -3'
miRNA:   3'- gcuaGUAGUC-GCGCGGUCCGg---GCUug -5'
28004 5' -57.7 NC_005887.1 + 40169 0.68 0.356662
Target:  5'- cCGAUCAccgCGGCcgGCGUCAGG-CCGAAg -3'
miRNA:   3'- -GCUAGUa--GUCG--CGCGGUCCgGGCUUg -5'
28004 5' -57.7 NC_005887.1 + 18876 0.69 0.331668
Target:  5'- aGAUCAagGGCGuCGCC-GGCugCCGGGCu -3'
miRNA:   3'- gCUAGUagUCGC-GCGGuCCG--GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 38878 1.1 0.000339
Target:  5'- uCGAUCAUCAGCGCGCCAGGCCCGAACa -3'
miRNA:   3'- -GCUAGUAGUCGCGCGGUCCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 38234 0.66 0.479275
Target:  5'- uGAUCGUCugccGCGUGUCcuGCgCGAACu -3'
miRNA:   3'- gCUAGUAGu---CGCGCGGucCGgGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 37198 0.66 0.479275
Target:  5'- aGcAUCAgCGGCGCGCCgacgucGGGCagcgcggucaugCCGAGCu -3'
miRNA:   3'- gC-UAGUaGUCGCGCGG------UCCG------------GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 1703 0.67 0.44907
Target:  5'- cCGGUgAUCGGCGCGCgcucguCAGuGCCUGucuuGCc -3'
miRNA:   3'- -GCUAgUAGUCGCGCG------GUC-CGGGCu---UG- -5'
28004 5' -57.7 NC_005887.1 + 3786 0.67 0.44907
Target:  5'- aGAUCAUCGGUGUugucaccgGCCAGuggcGCCCGc-- -3'
miRNA:   3'- gCUAGUAGUCGCG--------CGGUC----CGGGCuug -5'
28004 5' -57.7 NC_005887.1 + 21948 0.67 0.419946
Target:  5'- aGA-UAUUAccccCGCGCCGGGCCUGAAa -3'
miRNA:   3'- gCUaGUAGUc---GCGCGGUCCGGGCUUg -5'
28004 5' -57.7 NC_005887.1 + 18399 0.68 0.365282
Target:  5'- aGGUCGUCGGUGCGUgcgCAgacGGCCgCGAGg -3'
miRNA:   3'- gCUAGUAGUCGCGCG---GU---CCGG-GCUUg -5'
28004 5' -57.7 NC_005887.1 + 27918 0.67 0.410494
Target:  5'- uCGAUCgcgGUUGcGCGCGUCGGGUCCgcuuGAACg -3'
miRNA:   3'- -GCUAG---UAGU-CGCGCGGUCCGGG----CUUG- -5'
28004 5' -57.7 NC_005887.1 + 19366 0.67 0.419946
Target:  5'- uCGAUCAgCGGCaacGCGCCAuGCUCGcGCa -3'
miRNA:   3'- -GCUAGUaGUCG---CGCGGUcCGGGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 26902 0.66 0.499955
Target:  5'- gCGGUCAUCgcGGCGaCGUCGuccGGUugaCCGAACa -3'
miRNA:   3'- -GCUAGUAG--UCGC-GCGGU---CCG---GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 16013 0.68 0.401176
Target:  5'- uCGcgCAcccggcCAGCGCcgGCCAcGGCCUGAACc -3'
miRNA:   3'- -GCuaGUa-----GUCGCG--CGGU-CCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 17799 0.66 0.499955
Target:  5'- gCGAUCAUgGGCGCccgGCCgaAGGUgCGGccGCg -3'
miRNA:   3'- -GCUAGUAgUCGCG---CGG--UCCGgGCU--UG- -5'
28004 5' -57.7 NC_005887.1 + 17881 0.67 0.429527
Target:  5'- aCGA-CAcgaUCGGcCGCGCCAacGGCCUGAu- -3'
miRNA:   3'- -GCUaGU---AGUC-GCGCGGU--CCGGGCUug -5'
28004 5' -57.7 NC_005887.1 + 12589 0.68 0.401176
Target:  5'- gCGAUCcucgcgAUCAGCuCGCCGGGCaagaCCGuGCa -3'
miRNA:   3'- -GCUAG------UAGUCGcGCGGUCCG----GGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 20532 0.69 0.331668
Target:  5'- --uUCAuUCGGCGCGCCcggcAGcGCCgCGGACg -3'
miRNA:   3'- gcuAGU-AGUCGCGCGG----UC-CGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 30202 0.66 0.489564
Target:  5'- gCGAUCGUCaccaaucuGGCGCGCgAcggcGGCCUGcuCg -3'
miRNA:   3'- -GCUAGUAG--------UCGCGCGgU----CCGGGCuuG- -5'
28004 5' -57.7 NC_005887.1 + 14996 0.67 0.458023
Target:  5'- cCGAcgcUCGUCuGCGCGCCGcugcgcguGGCgcagucgacguggCCGGACg -3'
miRNA:   3'- -GCU---AGUAGuCGCGCGGU--------CCG-------------GGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.