Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28004 | 5' | -57.7 | NC_005887.1 | + | 12589 | 0.68 | 0.401176 |
Target: 5'- gCGAUCcucgcgAUCAGCuCGCCGGGCaagaCCGuGCa -3' miRNA: 3'- -GCUAG------UAGUCGcGCGGUCCG----GGCuUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 1955 | 0.66 | 0.510443 |
Target: 5'- ---aCGUCGGcCGUGCCGGGCaucaCGAu- -3' miRNA: 3'- gcuaGUAGUC-GCGCGGUCCGg---GCUug -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 26902 | 0.66 | 0.499955 |
Target: 5'- gCGGUCAUCgcGGCGaCGUCGuccGGUugaCCGAACa -3' miRNA: 3'- -GCUAGUAG--UCGC-GCGGU---CCG---GGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 17881 | 0.67 | 0.429527 |
Target: 5'- aCGA-CAcgaUCGGcCGCGCCAacGGCCUGAu- -3' miRNA: 3'- -GCUaGU---AGUC-GCGCGGU--CCGGGCUug -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 19366 | 0.67 | 0.419946 |
Target: 5'- uCGAUCAgCGGCaacGCGCCAuGCUCGcGCa -3' miRNA: 3'- -GCUAGUaGUCG---CGCGGUcCGGGCuUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 17799 | 0.66 | 0.499955 |
Target: 5'- gCGAUCAUgGGCGCccgGCCgaAGGUgCGGccGCg -3' miRNA: 3'- -GCUAGUAgUCGCG---CGG--UCCGgGCU--UG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 14996 | 0.67 | 0.458023 |
Target: 5'- cCGAcgcUCGUCuGCGCGCCGcugcgcguGGCgcagucgacguggCCGGACg -3' miRNA: 3'- -GCU---AGUAGuCGCGCGGU--------CCG-------------GGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 3786 | 0.67 | 0.44907 |
Target: 5'- aGAUCAUCGGUGUugucaccgGCCAGuggcGCCCGc-- -3' miRNA: 3'- gCUAGUAGUCGCG--------CGGUC----CGGGCuug -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 16013 | 0.68 | 0.401176 |
Target: 5'- uCGcgCAcccggcCAGCGCcgGCCAcGGCCUGAACc -3' miRNA: 3'- -GCuaGUa-----GUCGCG--CGGU-CCGGGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 20532 | 0.69 | 0.331668 |
Target: 5'- --uUCAuUCGGCGCGCCcggcAGcGCCgCGGACg -3' miRNA: 3'- gcuAGU-AGUCGCGCGG----UC-CGG-GCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 38878 | 1.1 | 0.000339 |
Target: 5'- uCGAUCAUCAGCGCGCCAGGCCCGAACa -3' miRNA: 3'- -GCUAGUAGUCGCGCGGUCCGGGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 38234 | 0.66 | 0.479275 |
Target: 5'- uGAUCGUCugccGCGUGUCcuGCgCGAACu -3' miRNA: 3'- gCUAGUAGu---CGCGCGGucCGgGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 30202 | 0.66 | 0.489564 |
Target: 5'- gCGAUCGUCaccaaucuGGCGCGCgAcggcGGCCUGcuCg -3' miRNA: 3'- -GCUAGUAG--------UCGCGCGgU----CCGGGCuuG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 28831 | 0.67 | 0.410494 |
Target: 5'- gCGAUCGU-GGCGCGCau-GCCCGuGCc -3' miRNA: 3'- -GCUAGUAgUCGCGCGgucCGGGCuUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 27918 | 0.67 | 0.410494 |
Target: 5'- uCGAUCgcgGUUGcGCGCGUCGGGUCCgcuuGAACg -3' miRNA: 3'- -GCUAG---UAGU-CGCGCGGUCCGGG----CUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 37198 | 0.66 | 0.479275 |
Target: 5'- aGcAUCAgCGGCGCGCCgacgucGGGCagcgcggucaugCCGAGCu -3' miRNA: 3'- gC-UAGUaGUCGCGCGG------UCCG------------GGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 40169 | 0.68 | 0.356662 |
Target: 5'- cCGAUCAccgCGGCcgGCGUCAGG-CCGAAg -3' miRNA: 3'- -GCUAGUa--GUCG--CGCGGUCCgGGCUUg -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 18876 | 0.69 | 0.331668 |
Target: 5'- aGAUCAagGGCGuCGCC-GGCugCCGGGCu -3' miRNA: 3'- gCUAGUagUCGC-GCGGuCCG--GGCUUG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 1703 | 0.67 | 0.44907 |
Target: 5'- cCGGUgAUCGGCGCGCgcucguCAGuGCCUGucuuGCc -3' miRNA: 3'- -GCUAgUAGUCGCGCG------GUC-CGGGCu---UG- -5' |
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28004 | 5' | -57.7 | NC_005887.1 | + | 21948 | 0.67 | 0.419946 |
Target: 5'- aGA-UAUUAccccCGCGCCGGGCCUGAAa -3' miRNA: 3'- gCUaGUAGUc---GCGCGGUCCGGGCUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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