miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28004 5' -57.7 NC_005887.1 + 26072 0.74 0.16361
Target:  5'- --cUgGUCAGCGCGUCAgcGGCCCGcGCg -3'
miRNA:   3'- gcuAgUAGUCGCGCGGU--CCGGGCuUG- -5'
28004 5' -57.7 NC_005887.1 + 27252 0.66 0.469093
Target:  5'- ---gCAUC-GCGCGCC-GGCCCGc-- -3'
miRNA:   3'- gcuaGUAGuCGCGCGGuCCGGGCuug -5'
28004 5' -57.7 NC_005887.1 + 2487 0.66 0.469093
Target:  5'- gGAUCAUCgacGGCGaGCCcGGCCUGcuCg -3'
miRNA:   3'- gCUAGUAG---UCGCgCGGuCCGGGCuuG- -5'
28004 5' -57.7 NC_005887.1 + 27132 0.67 0.459024
Target:  5'- uCGAcUCGUCGGCGaucacgcgGCCGaacGGCCaCGGGCg -3'
miRNA:   3'- -GCU-AGUAGUCGCg-------CGGU---CCGG-GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 4009 0.67 0.44907
Target:  5'- uCGAccugCGUucCGGCGCGCUGaauugggguGGCCUGAACg -3'
miRNA:   3'- -GCUa---GUA--GUCGCGCGGU---------CCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 9279 0.67 0.439237
Target:  5'- gCGGUCGgcaCGGCGaCGCCgcagguuacGGGCaCCGAAa -3'
miRNA:   3'- -GCUAGUa--GUCGC-GCGG---------UCCG-GGCUUg -5'
28004 5' -57.7 NC_005887.1 + 32794 0.67 0.428563
Target:  5'- gGAUCGgc-GCGCGCCgcuucacGGGCaCGAACa -3'
miRNA:   3'- gCUAGUaguCGCGCGG-------UCCGgGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 17438 0.68 0.401176
Target:  5'- gCGcUCGUCgAGCGCuaC-GGCCCGAAUc -3'
miRNA:   3'- -GCuAGUAG-UCGCGcgGuCCGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 34379 0.68 0.401176
Target:  5'- gCGuAUCAgagugCGGCcggGCGCgAGGCCCGGccuGCa -3'
miRNA:   3'- -GC-UAGUa----GUCG---CGCGgUCCGGGCU---UG- -5'
28004 5' -57.7 NC_005887.1 + 13537 0.68 0.374045
Target:  5'- aCGAUCGcgaaugcgaUCGGCgauGCGCUgccGCCCGAGCa -3'
miRNA:   3'- -GCUAGU---------AGUCG---CGCGGuc-CGGGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 18236 0.68 0.374045
Target:  5'- uGAUCGccUCGGCcaCGCCGGGCaCCGucACg -3'
miRNA:   3'- gCUAGU--AGUCGc-GCGGUCCG-GGCu-UG- -5'
28004 5' -57.7 NC_005887.1 + 11377 0.68 0.365282
Target:  5'- gCGggCGUCAGCGCaGCCGGaGCgCUGGc- -3'
miRNA:   3'- -GCuaGUAGUCGCG-CGGUC-CG-GGCUug -5'
28004 5' -57.7 NC_005887.1 + 30438 0.69 0.339854
Target:  5'- cCGA-CGUCGGgGCggggcauguuGCCGGGCUgGAACa -3'
miRNA:   3'- -GCUaGUAGUCgCG----------CGGUCCGGgCUUG- -5'
28004 5' -57.7 NC_005887.1 + 40755 0.69 0.323627
Target:  5'- gCGAUCgccGUUGGCGCGCCGcGCgccgCCGAGCc -3'
miRNA:   3'- -GCUAG---UAGUCGCGCGGUcCG----GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 13124 0.69 0.323627
Target:  5'- aGGUCGacaccUCgAGCGUGCCGGGCCuCGucuCg -3'
miRNA:   3'- gCUAGU-----AG-UCGCGCGGUCCGG-GCuu-G- -5'
28004 5' -57.7 NC_005887.1 + 10257 0.72 0.226217
Target:  5'- uGAUCGUCcGC-CGCCAGGUCaaCGGGCa -3'
miRNA:   3'- gCUAGUAGuCGcGCGGUCCGG--GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 28527 0.73 0.192177
Target:  5'- gCGGUCAggcacgcUCAcGCGCGCCGGGCUgcUGAAUu -3'
miRNA:   3'- -GCUAGU-------AGU-CGCGCGGUCCGG--GCUUG- -5'
28004 5' -57.7 NC_005887.1 + 21808 0.73 0.177625
Target:  5'- aCGAcgUCcgCGGCGCuGCCGGGCgcgCCGAAUg -3'
miRNA:   3'- -GCU--AGuaGUCGCG-CGGUCCG---GGCUUG- -5'
28004 5' -57.7 NC_005887.1 + 14348 0.74 0.16361
Target:  5'- gCGAUCGUgaagCAGCGUGCCGGGCaCCu--- -3'
miRNA:   3'- -GCUAGUA----GUCGCGCGGUCCG-GGcuug -5'
28004 5' -57.7 NC_005887.1 + 33741 0.77 0.093175
Target:  5'- gCGAggAUCAGCGCGCC-GGCCuucaCGAGCa -3'
miRNA:   3'- -GCUagUAGUCGCGCGGuCCGG----GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.