miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 21205 0.69 0.267148
Target:  5'- -aCGCCGUcggaUUGGCACUagcaUUCGUGGCGu -3'
miRNA:   3'- gcGCGGCA----AGCCGUGG----AAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 35834 0.69 0.260505
Target:  5'- uGCGCCGcgUCGGCguagaucaucGCCUgcggauugCGCucGGCAGa -3'
miRNA:   3'- gCGCGGCa-AGCCG----------UGGAa-------GCG--CCGUC- -5'
28006 3' -59.9 NC_005887.1 + 25052 0.69 0.280843
Target:  5'- uGCGCCGaacCGGCGuuUgcgcgCGCGGCGc -3'
miRNA:   3'- gCGCGGCaa-GCCGUggAa----GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 28784 0.69 0.280843
Target:  5'- uCGCGUCG-UCGGcCugCUcggGCGGCAGc -3'
miRNA:   3'- -GCGCGGCaAGCC-GugGAag-CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 36933 0.69 0.273927
Target:  5'- uCGCGCCGgucgcugCGGCGCCgccCGcCGGUu- -3'
miRNA:   3'- -GCGCGGCaa-----GCCGUGGaa-GC-GCCGuc -5'
28006 3' -59.9 NC_005887.1 + 40775 0.68 0.302422
Target:  5'- gCGCGCCGccgagcCGGCGgUcgaggUUCGUGGCGGc -3'
miRNA:   3'- -GCGCGGCaa----GCCGUgG-----AAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 23091 0.68 0.302422
Target:  5'- uGCGUCGg-CGGCACCaa-GCGGUAc -3'
miRNA:   3'- gCGCGGCaaGCCGUGGaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 26564 0.68 0.302422
Target:  5'- -cUGCCGcaucgaucugcUUCuGCGCCUUCGCGGCc- -3'
miRNA:   3'- gcGCGGC-----------AAGcCGUGGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 32526 0.68 0.309893
Target:  5'- cCGCGCUGacCGGCugCgaCGCGuucGCGGg -3'
miRNA:   3'- -GCGCGGCaaGCCGugGaaGCGC---CGUC- -5'
28006 3' -59.9 NC_005887.1 + 35681 0.68 0.29509
Target:  5'- aGCGCgCGaUCGGCgGCCggcuUCGCGGUu- -3'
miRNA:   3'- gCGCG-GCaAGCCG-UGGa---AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 14229 0.68 0.317504
Target:  5'- cCGCGCUGUUCGGC------GCGGCAu -3'
miRNA:   3'- -GCGCGGCAAGCCGuggaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 14606 0.68 0.302422
Target:  5'- aCGCGUaCGgccgUCGGCGCCgUCGagggcgcgcucaCGGCAGc -3'
miRNA:   3'- -GCGCG-GCa---AGCCGUGGaAGC------------GCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 2944 0.68 0.306888
Target:  5'- aGCGCCG--CGGCACCgccgcgaccauccUCGcCGGCGa -3'
miRNA:   3'- gCGCGGCaaGCCGUGGa------------AGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 28345 0.67 0.346062
Target:  5'- uGCGCCGgcgcggcauuggcUUCGaGCACgaacgcgucgacggCUUCGCGGCu- -3'
miRNA:   3'- gCGCGGC-------------AAGC-CGUG--------------GAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 27604 0.67 0.357654
Target:  5'- aGCGUCGUgucgaaGGCGCUgauaccgUCGCGGUu- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGa------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 13898 0.67 0.357654
Target:  5'- uCGUGCgCG-UCGGCAU--UCGUGGCAc -3'
miRNA:   3'- -GCGCG-GCaAGCCGUGgaAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 37184 0.67 0.366099
Target:  5'- uGCGUCGgcUCGGCGuCCUUCagcuCGGCGu -3'
miRNA:   3'- gCGCGGCa-AGCCGU-GGAAGc---GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 14961 0.67 0.366099
Target:  5'- aCGCGCCGcacUCGaCGCCUaCGcCGcGCAGg -3'
miRNA:   3'- -GCGCGGCa--AGCcGUGGAaGC-GC-CGUC- -5'
28006 3' -59.9 NC_005887.1 + 2462 0.67 0.374681
Target:  5'- gGCGCCGUcgacgaGGCGCUgaCGCGGa-- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGaaGCGCCguc -5'
28006 3' -59.9 NC_005887.1 + 4094 0.67 0.374681
Target:  5'- gGCGCaGaUCGGCAUCgagUucgcgcaggacaCGCGGCAGa -3'
miRNA:   3'- gCGCGgCaAGCCGUGGa--A------------GCGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.