miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 14961 0.67 0.366099
Target:  5'- aCGCGCCGcacUCGaCGCCUaCGcCGcGCAGg -3'
miRNA:   3'- -GCGCGGCa--AGCcGUGGAaGC-GC-CGUC- -5'
28006 3' -59.9 NC_005887.1 + 15273 0.66 0.407596
Target:  5'- aGCGCagcaaGcgCGGCACCgagUUcgugaagaagucggGCGGCAGc -3'
miRNA:   3'- gCGCGg----CaaGCCGUGGa--AG--------------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 16027 0.66 0.392248
Target:  5'- aGCGCCGgccaCGGCcugaACCUgcaggacgGCGGCAa -3'
miRNA:   3'- gCGCGGCaa--GCCG----UGGAag------CGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 17280 0.67 0.341177
Target:  5'- aGaCGUCGggCGGCGCCg-CGCGcGCAa -3'
miRNA:   3'- gC-GCGGCaaGCCGUGGaaGCGC-CGUc -5'
28006 3' -59.9 NC_005887.1 + 17725 0.7 0.235274
Target:  5'- gGUGCCGUucuucaagacgcUCGGCACggccgCGCGGCuGa -3'
miRNA:   3'- gCGCGGCA------------AGCCGUGgaa--GCGCCGuC- -5'
28006 3' -59.9 NC_005887.1 + 18951 0.73 0.142088
Target:  5'- aCGCGCUGcugCGGCugCca-GCGGCAGc -3'
miRNA:   3'- -GCGCGGCaa-GCCGugGaagCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 19059 0.66 0.383397
Target:  5'- gGCGuuGUucuUCGGCGCgggcUGCGGCAa -3'
miRNA:   3'- gCGCggCA---AGCCGUGgaa-GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 21205 0.69 0.267148
Target:  5'- -aCGCCGUcggaUUGGCACUagcaUUCGUGGCGu -3'
miRNA:   3'- gcGCGGCA----AGCCGUGG----AAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 23091 0.68 0.302422
Target:  5'- uGCGUCGg-CGGCACCaa-GCGGUAc -3'
miRNA:   3'- gCGCGGCaaGCCGUGGaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 23259 0.66 0.419582
Target:  5'- gCGCGCaaaa-GGCGCagcUCGUGGCGGu -3'
miRNA:   3'- -GCGCGgcaagCCGUGga-AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 23935 0.66 0.40123
Target:  5'- aGCGUCGUgcugacgaCGGCGCC---GCGGCGu -3'
miRNA:   3'- gCGCGGCAa-------GCCGUGGaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 25052 0.69 0.280843
Target:  5'- uGCGCCGaacCGGCGuuUgcgcgCGCGGCGc -3'
miRNA:   3'- gCGCGGCaa-GCCGUggAa----GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 25497 0.66 0.410343
Target:  5'- cCGCGCCG--CGGUACaCcUCGCGGa-- -3'
miRNA:   3'- -GCGCGGCaaGCCGUG-GaAGCGCCguc -5'
28006 3' -59.9 NC_005887.1 + 25822 0.74 0.110912
Target:  5'- aCGCGCCcacUCGGCGCCg--GCGGCGa -3'
miRNA:   3'- -GCGCGGca-AGCCGUGGaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 26522 0.66 0.383397
Target:  5'- uCGCGCCGcgcaagCGcuGCACCUgcgccUCGUGGuCAGu -3'
miRNA:   3'- -GCGCGGCaa----GC--CGUGGA-----AGCGCC-GUC- -5'
28006 3' -59.9 NC_005887.1 + 26564 0.68 0.302422
Target:  5'- -cUGCCGcaucgaucugcUUCuGCGCCUUCGCGGCc- -3'
miRNA:   3'- gcGCGGC-----------AAGcCGUGGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 27409 0.72 0.167138
Target:  5'- gCGCGUCGUaCGGCAgCg-CGCGGCGu -3'
miRNA:   3'- -GCGCGGCAaGCCGUgGaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 27604 0.67 0.357654
Target:  5'- aGCGUCGUgucgaaGGCGCUgauaccgUCGCGGUu- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGa------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 27786 0.66 0.383397
Target:  5'- aGCGCCaugacgaCGGCGCCgaCGCaGGCGa -3'
miRNA:   3'- gCGCGGcaa----GCCGUGGaaGCG-CCGUc -5'
28006 3' -59.9 NC_005887.1 + 27838 0.66 0.419582
Target:  5'- cCGCGCCugcaagCGGacCACCaagcacCGCGGCGGg -3'
miRNA:   3'- -GCGCGGcaa---GCC--GUGGaa----GCGCCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.