Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 1477 | 0.7 | 0.241383 |
Target: 5'- cCGaCGCCGacggcgugCGGCGCUcgCGCGGCGc -3' miRNA: 3'- -GC-GCGGCaa------GCCGUGGaaGCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 1494 | 0.67 | 0.349346 |
Target: 5'- aCGCGCg---CGGCGgCUUCGcCGGUGGa -3' miRNA: 3'- -GCGCGgcaaGCCGUgGAAGC-GCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 2183 | 0.67 | 0.341177 |
Target: 5'- uCGUGCCG-UCGcGCAgCUcacaCGCGGCGa -3' miRNA: 3'- -GCGCGGCaAGC-CGUgGAa---GCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 2432 | 0.66 | 0.428947 |
Target: 5'- aCGCGCC---CGGCucgAUCUgCGCGGCAc -3' miRNA: 3'- -GCGCGGcaaGCCG---UGGAaGCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 2462 | 0.67 | 0.374681 |
Target: 5'- gGCGCCGUcgacgaGGCGCUgaCGCGGa-- -3' miRNA: 3'- gCGCGGCAag----CCGUGGaaGCGCCguc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 2944 | 0.68 | 0.306888 |
Target: 5'- aGCGCCG--CGGCACCgccgcgaccauccUCGcCGGCGa -3' miRNA: 3'- gCGCGGCaaGCCGUGGa------------AGC-GCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 3845 | 0.67 | 0.35017 |
Target: 5'- gGCGCUucuacgUCGGCACCgacgauguguacgGCGGCAGc -3' miRNA: 3'- gCGCGGca----AGCCGUGGaag----------CGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 4094 | 0.67 | 0.374681 |
Target: 5'- gGCGCaGaUCGGCAUCgagUucgcgcaggacaCGCGGCAGa -3' miRNA: 3'- gCGCGgCaAGCCGUGGa--A------------GCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 4920 | 0.66 | 0.428947 |
Target: 5'- aGCGCCGcgcuccacUCcGCACCUggcgUGCaGGCAGu -3' miRNA: 3'- gCGCGGCa-------AGcCGUGGAa---GCG-CCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 6049 | 0.66 | 0.428947 |
Target: 5'- gGUGCUGgu-GGCAgCggCGCGGCAc -3' miRNA: 3'- gCGCGGCaagCCGUgGaaGCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 7453 | 0.66 | 0.40123 |
Target: 5'- gCGCGUCGUgaUCGGCauGCCgUUCGCGaacgaGCGc -3' miRNA: 3'- -GCGCGGCA--AGCCG--UGG-AAGCGC-----CGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 10224 | 0.66 | 0.428947 |
Target: 5'- cCGCGCCGgaCGGCGCguCUgaugaccUGUGGguGa -3' miRNA: 3'- -GCGCGGCaaGCCGUG--GAa------GCGCCguC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 11884 | 0.66 | 0.392248 |
Target: 5'- -uCGUCGUUCGGCAgcgccggcaaCUUCaCGGCGGg -3' miRNA: 3'- gcGCGGCAAGCCGUg---------GAAGcGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 12063 | 0.66 | 0.419582 |
Target: 5'- cCGCGCUGcagcaggUCGGCACg-UCGCucGGuCAGg -3' miRNA: 3'- -GCGCGGCa------AGCCGUGgaAGCG--CC-GUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 13898 | 0.67 | 0.357654 |
Target: 5'- uCGUGCgCG-UCGGCAU--UCGUGGCAc -3' miRNA: 3'- -GCGCG-GCaAGCCGUGgaAGCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14229 | 0.68 | 0.317504 |
Target: 5'- cCGCGCUGUUCGGC------GCGGCAu -3' miRNA: 3'- -GCGCGGCAAGCCGuggaagCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14547 | 0.74 | 0.123889 |
Target: 5'- gCGCGUCGaUCGGCAUg-UCGCGcGCGGa -3' miRNA: 3'- -GCGCGGCaAGCCGUGgaAGCGC-CGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14570 | 0.66 | 0.383397 |
Target: 5'- gGCGCCGUcgucaUGGCGCuCUaccUCGcCGGCGc -3' miRNA: 3'- gCGCGGCAa----GCCGUG-GA---AGC-GCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14606 | 0.68 | 0.302422 |
Target: 5'- aCGCGUaCGgccgUCGGCGCCgUCGagggcgcgcucaCGGCAGc -3' miRNA: 3'- -GCGCG-GCa---AGCCGUGGaAGC------------GCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14703 | 0.67 | 0.349346 |
Target: 5'- uCGCGgCGggCGG-GCCgggCGCGGCGa -3' miRNA: 3'- -GCGCgGCaaGCCgUGGaa-GCGCCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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