miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 1477 0.7 0.241383
Target:  5'- cCGaCGCCGacggcgugCGGCGCUcgCGCGGCGc -3'
miRNA:   3'- -GC-GCGGCaa------GCCGUGGaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 1494 0.67 0.349346
Target:  5'- aCGCGCg---CGGCGgCUUCGcCGGUGGa -3'
miRNA:   3'- -GCGCGgcaaGCCGUgGAAGC-GCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 2183 0.67 0.341177
Target:  5'- uCGUGCCG-UCGcGCAgCUcacaCGCGGCGa -3'
miRNA:   3'- -GCGCGGCaAGC-CGUgGAa---GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 2432 0.66 0.428947
Target:  5'- aCGCGCC---CGGCucgAUCUgCGCGGCAc -3'
miRNA:   3'- -GCGCGGcaaGCCG---UGGAaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 2462 0.67 0.374681
Target:  5'- gGCGCCGUcgacgaGGCGCUgaCGCGGa-- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGaaGCGCCguc -5'
28006 3' -59.9 NC_005887.1 + 2944 0.68 0.306888
Target:  5'- aGCGCCG--CGGCACCgccgcgaccauccUCGcCGGCGa -3'
miRNA:   3'- gCGCGGCaaGCCGUGGa------------AGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 3845 0.67 0.35017
Target:  5'- gGCGCUucuacgUCGGCACCgacgauguguacgGCGGCAGc -3'
miRNA:   3'- gCGCGGca----AGCCGUGGaag----------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 4094 0.67 0.374681
Target:  5'- gGCGCaGaUCGGCAUCgagUucgcgcaggacaCGCGGCAGa -3'
miRNA:   3'- gCGCGgCaAGCCGUGGa--A------------GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 4920 0.66 0.428947
Target:  5'- aGCGCCGcgcuccacUCcGCACCUggcgUGCaGGCAGu -3'
miRNA:   3'- gCGCGGCa-------AGcCGUGGAa---GCG-CCGUC- -5'
28006 3' -59.9 NC_005887.1 + 6049 0.66 0.428947
Target:  5'- gGUGCUGgu-GGCAgCggCGCGGCAc -3'
miRNA:   3'- gCGCGGCaagCCGUgGaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 7453 0.66 0.40123
Target:  5'- gCGCGUCGUgaUCGGCauGCCgUUCGCGaacgaGCGc -3'
miRNA:   3'- -GCGCGGCA--AGCCG--UGG-AAGCGC-----CGUc -5'
28006 3' -59.9 NC_005887.1 + 10224 0.66 0.428947
Target:  5'- cCGCGCCGgaCGGCGCguCUgaugaccUGUGGguGa -3'
miRNA:   3'- -GCGCGGCaaGCCGUG--GAa------GCGCCguC- -5'
28006 3' -59.9 NC_005887.1 + 11884 0.66 0.392248
Target:  5'- -uCGUCGUUCGGCAgcgccggcaaCUUCaCGGCGGg -3'
miRNA:   3'- gcGCGGCAAGCCGUg---------GAAGcGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 12063 0.66 0.419582
Target:  5'- cCGCGCUGcagcaggUCGGCACg-UCGCucGGuCAGg -3'
miRNA:   3'- -GCGCGGCa------AGCCGUGgaAGCG--CC-GUC- -5'
28006 3' -59.9 NC_005887.1 + 13898 0.67 0.357654
Target:  5'- uCGUGCgCG-UCGGCAU--UCGUGGCAc -3'
miRNA:   3'- -GCGCG-GCaAGCCGUGgaAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 14229 0.68 0.317504
Target:  5'- cCGCGCUGUUCGGC------GCGGCAu -3'
miRNA:   3'- -GCGCGGCAAGCCGuggaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 14547 0.74 0.123889
Target:  5'- gCGCGUCGaUCGGCAUg-UCGCGcGCGGa -3'
miRNA:   3'- -GCGCGGCaAGCCGUGgaAGCGC-CGUC- -5'
28006 3' -59.9 NC_005887.1 + 14570 0.66 0.383397
Target:  5'- gGCGCCGUcgucaUGGCGCuCUaccUCGcCGGCGc -3'
miRNA:   3'- gCGCGGCAa----GCCGUG-GA---AGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 14606 0.68 0.302422
Target:  5'- aCGCGUaCGgccgUCGGCGCCgUCGagggcgcgcucaCGGCAGc -3'
miRNA:   3'- -GCGCG-GCa---AGCCGUGGaAGC------------GCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 14703 0.67 0.349346
Target:  5'- uCGCGgCGggCGG-GCCgggCGCGGCGa -3'
miRNA:   3'- -GCGCgGCaaGCCgUGGaa-GCGCCGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.