Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 41940 | 0.71 | 0.185972 |
Target: 5'- gCGgGCgGcgCGGCGCguCUUCGCGGCGc -3' miRNA: 3'- -GCgCGgCaaGCCGUG--GAAGCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 41804 | 0.74 | 0.114031 |
Target: 5'- uCGCGCUGUaucCGGCGCggcgCGCGGCGGc -3' miRNA: 3'- -GCGCGGCAa--GCCGUGgaa-GCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 41573 | 0.66 | 0.419582 |
Target: 5'- aGCGCCGagacguuccugUCGGCcagcggcgGCCcaggUGCGGCGGc -3' miRNA: 3'- gCGCGGCa----------AGCCG--------UGGaa--GCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 41498 | 0.66 | 0.383397 |
Target: 5'- aCGCGUCcacgGGCACCUuggcuuucuUCGCGGCc- -3' miRNA: 3'- -GCGCGGcaagCCGUGGA---------AGCGCCGuc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 40863 | 0.69 | 0.267148 |
Target: 5'- cCGCGCCGcgCGaGCGCCgcacgcCGuCGGCGu -3' miRNA: 3'- -GCGCGGCaaGC-CGUGGaa----GC-GCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 40775 | 0.68 | 0.302422 |
Target: 5'- gCGCGCCGccgagcCGGCGgUcgaggUUCGUGGCGGc -3' miRNA: 3'- -GCGCGGCaa----GCCGUgG-----AAGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 40501 | 0.7 | 0.238312 |
Target: 5'- gGCGCgacgucgUGUUCGGCAUCcaccacgcggcgCGCGGCAGc -3' miRNA: 3'- gCGCG-------GCAAGCCGUGGaa----------GCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 39432 | 0.67 | 0.329973 |
Target: 5'- uGCGCagcuuggcggCGGCGuCgUUCGCGGCGGc -3' miRNA: 3'- gCGCGgcaa------GCCGU-GgAAGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 39148 | 0.67 | 0.332351 |
Target: 5'- aGCGCUcg-CGGC-CCUUCucgcuguccgggcGCGGCAGc -3' miRNA: 3'- gCGCGGcaaGCCGuGGAAG-------------CGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 38828 | 0.73 | 0.138263 |
Target: 5'- gGCGCUGcaUCGGCACg-UUGCGGUAGa -3' miRNA: 3'- gCGCGGCa-AGCCGUGgaAGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 37872 | 1.07 | 0.000354 |
Target: 5'- gCGCGCCGUUCGGCACCUUCGCGGCAGc -3' miRNA: 3'- -GCGCGGCAAGCCGUGGAAGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 37725 | 0.73 | 0.150031 |
Target: 5'- uCGCGCCGg-CGGcCACCggcgcCGCGGCGa -3' miRNA: 3'- -GCGCGGCaaGCC-GUGGaa---GCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 37596 | 0.66 | 0.383397 |
Target: 5'- cCGCGCuCG-UCGcaaaaGCACCgccgguauugcUCGCGGCGGu -3' miRNA: 3'- -GCGCG-GCaAGC-----CGUGGa----------AGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 37458 | 0.77 | 0.077024 |
Target: 5'- uCGCGCCGgcccUCGGCgACCaucgUCGCGaGCGGa -3' miRNA: 3'- -GCGCGGCa---AGCCG-UGGa---AGCGC-CGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 37333 | 0.67 | 0.357654 |
Target: 5'- aGCGCCGgcacUGGCAUCggUCGCcGCAu -3' miRNA: 3'- gCGCGGCaa--GCCGUGGa-AGCGcCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 37184 | 0.67 | 0.366099 |
Target: 5'- uGCGUCGgcUCGGCGuCCUUCagcuCGGCGu -3' miRNA: 3'- gCGCGGCa-AGCCGU-GGAAGc---GCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 36933 | 0.69 | 0.273927 |
Target: 5'- uCGCGCCGgucgcugCGGCGCCgccCGcCGGUu- -3' miRNA: 3'- -GCGCGGCaa-----GCCGUGGaa-GC-GCCGuc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 36878 | 0.67 | 0.366099 |
Target: 5'- uGCGCCa-UCGGC-CUgcgUCGUGGUGGa -3' miRNA: 3'- gCGCGGcaAGCCGuGGa--AGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 36589 | 0.66 | 0.419582 |
Target: 5'- uCGCgGCCa----GCGCCUUCGCGGCc- -3' miRNA: 3'- -GCG-CGGcaagcCGUGGAAGCGCCGuc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 35834 | 0.69 | 0.260505 |
Target: 5'- uGCGCCGcgUCGGCguagaucaucGCCUgcggauugCGCucGGCAGa -3' miRNA: 3'- gCGCGGCa-AGCCG----------UGGAa-------GCG--CCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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