miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 41940 0.71 0.185972
Target:  5'- gCGgGCgGcgCGGCGCguCUUCGCGGCGc -3'
miRNA:   3'- -GCgCGgCaaGCCGUG--GAAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 41804 0.74 0.114031
Target:  5'- uCGCGCUGUaucCGGCGCggcgCGCGGCGGc -3'
miRNA:   3'- -GCGCGGCAa--GCCGUGgaa-GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 41573 0.66 0.419582
Target:  5'- aGCGCCGagacguuccugUCGGCcagcggcgGCCcaggUGCGGCGGc -3'
miRNA:   3'- gCGCGGCa----------AGCCG--------UGGaa--GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 41498 0.66 0.383397
Target:  5'- aCGCGUCcacgGGCACCUuggcuuucuUCGCGGCc- -3'
miRNA:   3'- -GCGCGGcaagCCGUGGA---------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 40863 0.69 0.267148
Target:  5'- cCGCGCCGcgCGaGCGCCgcacgcCGuCGGCGu -3'
miRNA:   3'- -GCGCGGCaaGC-CGUGGaa----GC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 40775 0.68 0.302422
Target:  5'- gCGCGCCGccgagcCGGCGgUcgaggUUCGUGGCGGc -3'
miRNA:   3'- -GCGCGGCaa----GCCGUgG-----AAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 40501 0.7 0.238312
Target:  5'- gGCGCgacgucgUGUUCGGCAUCcaccacgcggcgCGCGGCAGc -3'
miRNA:   3'- gCGCG-------GCAAGCCGUGGaa----------GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 39432 0.67 0.329973
Target:  5'- uGCGCagcuuggcggCGGCGuCgUUCGCGGCGGc -3'
miRNA:   3'- gCGCGgcaa------GCCGU-GgAAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 39148 0.67 0.332351
Target:  5'- aGCGCUcg-CGGC-CCUUCucgcuguccgggcGCGGCAGc -3'
miRNA:   3'- gCGCGGcaaGCCGuGGAAG-------------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 38828 0.73 0.138263
Target:  5'- gGCGCUGcaUCGGCACg-UUGCGGUAGa -3'
miRNA:   3'- gCGCGGCa-AGCCGUGgaAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 37872 1.07 0.000354
Target:  5'- gCGCGCCGUUCGGCACCUUCGCGGCAGc -3'
miRNA:   3'- -GCGCGGCAAGCCGUGGAAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 37725 0.73 0.150031
Target:  5'- uCGCGCCGg-CGGcCACCggcgcCGCGGCGa -3'
miRNA:   3'- -GCGCGGCaaGCC-GUGGaa---GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 37596 0.66 0.383397
Target:  5'- cCGCGCuCG-UCGcaaaaGCACCgccgguauugcUCGCGGCGGu -3'
miRNA:   3'- -GCGCG-GCaAGC-----CGUGGa----------AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 37458 0.77 0.077024
Target:  5'- uCGCGCCGgcccUCGGCgACCaucgUCGCGaGCGGa -3'
miRNA:   3'- -GCGCGGCa---AGCCG-UGGa---AGCGC-CGUC- -5'
28006 3' -59.9 NC_005887.1 + 37333 0.67 0.357654
Target:  5'- aGCGCCGgcacUGGCAUCggUCGCcGCAu -3'
miRNA:   3'- gCGCGGCaa--GCCGUGGa-AGCGcCGUc -5'
28006 3' -59.9 NC_005887.1 + 37184 0.67 0.366099
Target:  5'- uGCGUCGgcUCGGCGuCCUUCagcuCGGCGu -3'
miRNA:   3'- gCGCGGCa-AGCCGU-GGAAGc---GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 36933 0.69 0.273927
Target:  5'- uCGCGCCGgucgcugCGGCGCCgccCGcCGGUu- -3'
miRNA:   3'- -GCGCGGCaa-----GCCGUGGaa-GC-GCCGuc -5'
28006 3' -59.9 NC_005887.1 + 36878 0.67 0.366099
Target:  5'- uGCGCCa-UCGGC-CUgcgUCGUGGUGGa -3'
miRNA:   3'- gCGCGGcaAGCCGuGGa--AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 36589 0.66 0.419582
Target:  5'- uCGCgGCCa----GCGCCUUCGCGGCc- -3'
miRNA:   3'- -GCG-CGGcaagcCGUGGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 35834 0.69 0.260505
Target:  5'- uGCGCCGcgUCGGCguagaucaucGCCUgcggauugCGCucGGCAGa -3'
miRNA:   3'- gCGCGGCa-AGCCG----------UGGAa-------GCG--CCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.