miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 35681 0.68 0.29509
Target:  5'- aGCGCgCGaUCGGCgGCCggcuUCGCGGUu- -3'
miRNA:   3'- gCGCG-GCaAGCCG-UGGa---AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 34826 0.71 0.206654
Target:  5'- uCGCGUCGgccuucUUGGCccaACCUUCGaCGGCAa -3'
miRNA:   3'- -GCGCGGCa-----AGCCG---UGGAAGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 34244 0.67 0.357654
Target:  5'- gGCGCC--UCGGCGag--CGCGGCGa -3'
miRNA:   3'- gCGCGGcaAGCCGUggaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 33751 0.71 0.190965
Target:  5'- gCGCGCCGgccuucaCGaGCAUCUggCGCGGCGu -3'
miRNA:   3'- -GCGCGGCaa-----GC-CGUGGAa-GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 33343 0.7 0.21829
Target:  5'- aGCGCCGUUugcacuucucccgacUGcagcggaugugcacGCGCCggCGCGGCAGg -3'
miRNA:   3'- gCGCGGCAA---------------GC--------------CGUGGaaGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 32526 0.68 0.309893
Target:  5'- cCGCGCUGacCGGCugCgaCGCGuucGCGGg -3'
miRNA:   3'- -GCGCGGCaaGCCGugGaaGCGC---CGUC- -5'
28006 3' -59.9 NC_005887.1 + 31224 0.73 0.130894
Target:  5'- uGCGCCGccaCGGCGCCUcggccagcuUCGCGcGCAc -3'
miRNA:   3'- gCGCGGCaa-GCCGUGGA---------AGCGC-CGUc -5'
28006 3' -59.9 NC_005887.1 + 30147 0.72 0.154152
Target:  5'- gCGCGcCCGgcgCGGCGcuguCCUUCGCGGUc- -3'
miRNA:   3'- -GCGC-GGCaa-GCCGU----GGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 28916 0.66 0.410343
Target:  5'- aCGUGCUGagCGGUgcGCCgcucgUCGCaGCAGc -3'
miRNA:   3'- -GCGCGGCaaGCCG--UGGa----AGCGcCGUC- -5'
28006 3' -59.9 NC_005887.1 + 28784 0.69 0.280843
Target:  5'- uCGCGUCG-UCGGcCugCUcggGCGGCAGc -3'
miRNA:   3'- -GCGCGGCaAGCC-GugGAag-CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 28345 0.67 0.346062
Target:  5'- uGCGCCGgcgcggcauuggcUUCGaGCACgaacgcgucgacggCUUCGCGGCu- -3'
miRNA:   3'- gCGCGGC-------------AAGC-CGUG--------------GAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 28337 0.71 0.201304
Target:  5'- gCGCGCCGg-CGGUugCggaggcgCGCGGCGc -3'
miRNA:   3'- -GCGCGGCaaGCCGugGaa-----GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 28198 0.67 0.349346
Target:  5'- uGCGCCGcaUCaGCGCCgcgcgUCuCGGCGGu -3'
miRNA:   3'- gCGCGGCa-AGcCGUGGa----AGcGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 27838 0.66 0.419582
Target:  5'- cCGCGCCugcaagCGGacCACCaagcacCGCGGCGGg -3'
miRNA:   3'- -GCGCGGcaa---GCC--GUGGaa----GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 27786 0.66 0.383397
Target:  5'- aGCGCCaugacgaCGGCGCCgaCGCaGGCGa -3'
miRNA:   3'- gCGCGGcaa----GCCGUGGaaGCG-CCGUc -5'
28006 3' -59.9 NC_005887.1 + 27604 0.67 0.357654
Target:  5'- aGCGUCGUgucgaaGGCGCUgauaccgUCGCGGUu- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGa------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 27409 0.72 0.167138
Target:  5'- gCGCGUCGUaCGGCAgCg-CGCGGCGu -3'
miRNA:   3'- -GCGCGGCAaGCCGUgGaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 26564 0.68 0.302422
Target:  5'- -cUGCCGcaucgaucugcUUCuGCGCCUUCGCGGCc- -3'
miRNA:   3'- gcGCGGC-----------AAGcCGUGGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 26522 0.66 0.383397
Target:  5'- uCGCGCCGcgcaagCGcuGCACCUgcgccUCGUGGuCAGu -3'
miRNA:   3'- -GCGCGGCaa----GC--CGUGGA-----AGCGCC-GUC- -5'
28006 3' -59.9 NC_005887.1 + 25822 0.74 0.110912
Target:  5'- aCGCGCCcacUCGGCGCCg--GCGGCGa -3'
miRNA:   3'- -GCGCGGca-AGCCGUGGaagCGCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.