Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 25497 | 0.66 | 0.410343 |
Target: 5'- cCGCGCCG--CGGUACaCcUCGCGGa-- -3' miRNA: 3'- -GCGCGGCaaGCCGUG-GaAGCGCCguc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 25052 | 0.69 | 0.280843 |
Target: 5'- uGCGCCGaacCGGCGuuUgcgcgCGCGGCGc -3' miRNA: 3'- gCGCGGCaa-GCCGUggAa----GCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 23935 | 0.66 | 0.40123 |
Target: 5'- aGCGUCGUgcugacgaCGGCGCC---GCGGCGu -3' miRNA: 3'- gCGCGGCAa-------GCCGUGGaagCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 23259 | 0.66 | 0.419582 |
Target: 5'- gCGCGCaaaa-GGCGCagcUCGUGGCGGu -3' miRNA: 3'- -GCGCGgcaagCCGUGga-AGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 23091 | 0.68 | 0.302422 |
Target: 5'- uGCGUCGg-CGGCACCaa-GCGGUAc -3' miRNA: 3'- gCGCGGCaaGCCGUGGaagCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 21205 | 0.69 | 0.267148 |
Target: 5'- -aCGCCGUcggaUUGGCACUagcaUUCGUGGCGu -3' miRNA: 3'- gcGCGGCA----AGCCGUGG----AAGCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 19059 | 0.66 | 0.383397 |
Target: 5'- gGCGuuGUucuUCGGCGCgggcUGCGGCAa -3' miRNA: 3'- gCGCggCA---AGCCGUGgaa-GCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 18951 | 0.73 | 0.142088 |
Target: 5'- aCGCGCUGcugCGGCugCca-GCGGCAGc -3' miRNA: 3'- -GCGCGGCaa-GCCGugGaagCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 17725 | 0.7 | 0.235274 |
Target: 5'- gGUGCCGUucuucaagacgcUCGGCACggccgCGCGGCuGa -3' miRNA: 3'- gCGCGGCA------------AGCCGUGgaa--GCGCCGuC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 17280 | 0.67 | 0.341177 |
Target: 5'- aGaCGUCGggCGGCGCCg-CGCGcGCAa -3' miRNA: 3'- gC-GCGGCaaGCCGUGGaaGCGC-CGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 16027 | 0.66 | 0.392248 |
Target: 5'- aGCGCCGgccaCGGCcugaACCUgcaggacgGCGGCAa -3' miRNA: 3'- gCGCGGCaa--GCCG----UGGAag------CGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 15273 | 0.66 | 0.407596 |
Target: 5'- aGCGCagcaaGcgCGGCACCgagUUcgugaagaagucggGCGGCAGc -3' miRNA: 3'- gCGCGg----CaaGCCGUGGa--AG--------------CGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14961 | 0.67 | 0.366099 |
Target: 5'- aCGCGCCGcacUCGaCGCCUaCGcCGcGCAGg -3' miRNA: 3'- -GCGCGGCa--AGCcGUGGAaGC-GC-CGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14703 | 0.67 | 0.349346 |
Target: 5'- uCGCGgCGggCGG-GCCgggCGCGGCGa -3' miRNA: 3'- -GCGCgGCaaGCCgUGGaa-GCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14606 | 0.68 | 0.302422 |
Target: 5'- aCGCGUaCGgccgUCGGCGCCgUCGagggcgcgcucaCGGCAGc -3' miRNA: 3'- -GCGCG-GCa---AGCCGUGGaAGC------------GCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14570 | 0.66 | 0.383397 |
Target: 5'- gGCGCCGUcgucaUGGCGCuCUaccUCGcCGGCGc -3' miRNA: 3'- gCGCGGCAa----GCCGUG-GA---AGC-GCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14547 | 0.74 | 0.123889 |
Target: 5'- gCGCGUCGaUCGGCAUg-UCGCGcGCGGa -3' miRNA: 3'- -GCGCGGCaAGCCGUGgaAGCGC-CGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14229 | 0.68 | 0.317504 |
Target: 5'- cCGCGCUGUUCGGC------GCGGCAu -3' miRNA: 3'- -GCGCGGCAAGCCGuggaagCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 13898 | 0.67 | 0.357654 |
Target: 5'- uCGUGCgCG-UCGGCAU--UCGUGGCAc -3' miRNA: 3'- -GCGCG-GCaAGCCGUGgaAGCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 12063 | 0.66 | 0.419582 |
Target: 5'- cCGCGCUGcagcaggUCGGCACg-UCGCucGGuCAGg -3' miRNA: 3'- -GCGCGGCa------AGCCGUGgaAGCG--CC-GUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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