Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 23091 | 0.68 | 0.302422 |
Target: 5'- uGCGUCGg-CGGCACCaa-GCGGUAc -3' miRNA: 3'- gCGCGGCaaGCCGUGGaagCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 28784 | 0.69 | 0.280843 |
Target: 5'- uCGCGUCG-UCGGcCugCUcggGCGGCAGc -3' miRNA: 3'- -GCGCGGCaAGCC-GugGAag-CGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 25052 | 0.69 | 0.280843 |
Target: 5'- uGCGCCGaacCGGCGuuUgcgcgCGCGGCGc -3' miRNA: 3'- gCGCGGCaa-GCCGUggAa----GCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 36933 | 0.69 | 0.273927 |
Target: 5'- uCGCGCCGgucgcugCGGCGCCgccCGcCGGUu- -3' miRNA: 3'- -GCGCGGCaa-----GCCGUGGaa-GC-GCCGuc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 40863 | 0.69 | 0.267148 |
Target: 5'- cCGCGCCGcgCGaGCGCCgcacgcCGuCGGCGu -3' miRNA: 3'- -GCGCGGCaaGC-CGUGGaa----GC-GCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 21205 | 0.69 | 0.267148 |
Target: 5'- -aCGCCGUcggaUUGGCACUagcaUUCGUGGCGu -3' miRNA: 3'- gcGCGGCA----AGCCGUGG----AAGCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 36878 | 0.67 | 0.366099 |
Target: 5'- uGCGCCa-UCGGC-CUgcgUCGUGGUGGa -3' miRNA: 3'- gCGCGGcaAGCCGuGGa--AGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14570 | 0.66 | 0.383397 |
Target: 5'- gGCGCCGUcgucaUGGCGCuCUaccUCGcCGGCGc -3' miRNA: 3'- gCGCGGCAa----GCCGUG-GA---AGC-GCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 4920 | 0.66 | 0.428947 |
Target: 5'- aGCGCCGcgcuccacUCcGCACCUggcgUGCaGGCAGu -3' miRNA: 3'- gCGCGGCa-------AGcCGUGGAa---GCG-CCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 27838 | 0.66 | 0.419582 |
Target: 5'- cCGCGCCugcaagCGGacCACCaagcacCGCGGCGGg -3' miRNA: 3'- -GCGCGGcaa---GCC--GUGGaa----GCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 36589 | 0.66 | 0.419582 |
Target: 5'- uCGCgGCCa----GCGCCUUCGCGGCc- -3' miRNA: 3'- -GCG-CGGcaagcCGUGGAAGCGCCGuc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 25497 | 0.66 | 0.410343 |
Target: 5'- cCGCGCCG--CGGUACaCcUCGCGGa-- -3' miRNA: 3'- -GCGCGGCaaGCCGUG-GaAGCGCCguc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 28916 | 0.66 | 0.410343 |
Target: 5'- aCGUGCUGagCGGUgcGCCgcucgUCGCaGCAGc -3' miRNA: 3'- -GCGCGGCaaGCCG--UGGa----AGCGcCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 15273 | 0.66 | 0.407596 |
Target: 5'- aGCGCagcaaGcgCGGCACCgagUUcgugaagaagucggGCGGCAGc -3' miRNA: 3'- gCGCGg----CaaGCCGUGGa--AG--------------CGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 23935 | 0.66 | 0.40123 |
Target: 5'- aGCGUCGUgcugacgaCGGCGCC---GCGGCGu -3' miRNA: 3'- gCGCGGCAa-------GCCGUGGaagCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 16027 | 0.66 | 0.392248 |
Target: 5'- aGCGCCGgccaCGGCcugaACCUgcaggacgGCGGCAa -3' miRNA: 3'- gCGCGGCaa--GCCG----UGGAag------CGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 37596 | 0.66 | 0.383397 |
Target: 5'- cCGCGCuCG-UCGcaaaaGCACCgccgguauugcUCGCGGCGGu -3' miRNA: 3'- -GCGCG-GCaAGC-----CGUGGa----------AGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 41498 | 0.66 | 0.383397 |
Target: 5'- aCGCGUCcacgGGCACCUuggcuuucuUCGCGGCc- -3' miRNA: 3'- -GCGCGGcaagCCGUGGA---------AGCGCCGuc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 26522 | 0.66 | 0.383397 |
Target: 5'- uCGCGCCGcgcaagCGcuGCACCUgcgccUCGUGGuCAGu -3' miRNA: 3'- -GCGCGGCaa----GC--CGUGGA-----AGCGCC-GUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 19059 | 0.66 | 0.383397 |
Target: 5'- gGCGuuGUucuUCGGCGCgggcUGCGGCAa -3' miRNA: 3'- gCGCggCA---AGCCGUGgaa-GCGCCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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