miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 28198 0.67 0.349346
Target:  5'- uGCGCCGcaUCaGCGCCgcgcgUCuCGGCGGu -3'
miRNA:   3'- gCGCGGCa-AGcCGUGGa----AGcGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 3845 0.67 0.35017
Target:  5'- gGCGCUucuacgUCGGCACCgacgauguguacgGCGGCAGc -3'
miRNA:   3'- gCGCGGca----AGCCGUGGaag----------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 34244 0.67 0.357654
Target:  5'- gGCGCC--UCGGCGag--CGCGGCGa -3'
miRNA:   3'- gCGCGGcaAGCCGUggaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 37333 0.67 0.357654
Target:  5'- aGCGCCGgcacUGGCAUCggUCGCcGCAu -3'
miRNA:   3'- gCGCGGCaa--GCCGUGGa-AGCGcCGUc -5'
28006 3' -59.9 NC_005887.1 + 13898 0.67 0.357654
Target:  5'- uCGUGCgCG-UCGGCAU--UCGUGGCAc -3'
miRNA:   3'- -GCGCG-GCaAGCCGUGgaAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 27604 0.67 0.357654
Target:  5'- aGCGUCGUgucgaaGGCGCUgauaccgUCGCGGUu- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGa------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 37184 0.67 0.366099
Target:  5'- uGCGUCGgcUCGGCGuCCUUCagcuCGGCGu -3'
miRNA:   3'- gCGCGGCa-AGCCGU-GGAAGc---GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 14961 0.67 0.366099
Target:  5'- aCGCGCCGcacUCGaCGCCUaCGcCGcGCAGg -3'
miRNA:   3'- -GCGCGGCa--AGCcGUGGAaGC-GC-CGUC- -5'
28006 3' -59.9 NC_005887.1 + 36878 0.67 0.366099
Target:  5'- uGCGCCa-UCGGC-CUgcgUCGUGGUGGa -3'
miRNA:   3'- gCGCGGcaAGCCGuGGa--AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 4094 0.67 0.374681
Target:  5'- gGCGCaGaUCGGCAUCgagUucgcgcaggacaCGCGGCAGa -3'
miRNA:   3'- gCGCGgCaAGCCGUGGa--A------------GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 2462 0.67 0.374681
Target:  5'- gGCGCCGUcgacgaGGCGCUgaCGCGGa-- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGaaGCGCCguc -5'
28006 3' -59.9 NC_005887.1 + 19059 0.66 0.383397
Target:  5'- gGCGuuGUucuUCGGCGCgggcUGCGGCAa -3'
miRNA:   3'- gCGCggCA---AGCCGUGgaa-GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 41498 0.66 0.383397
Target:  5'- aCGCGUCcacgGGCACCUuggcuuucuUCGCGGCc- -3'
miRNA:   3'- -GCGCGGcaagCCGUGGA---------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 27786 0.66 0.383397
Target:  5'- aGCGCCaugacgaCGGCGCCgaCGCaGGCGa -3'
miRNA:   3'- gCGCGGcaa----GCCGUGGaaGCG-CCGUc -5'
28006 3' -59.9 NC_005887.1 + 37596 0.66 0.383397
Target:  5'- cCGCGCuCG-UCGcaaaaGCACCgccgguauugcUCGCGGCGGu -3'
miRNA:   3'- -GCGCG-GCaAGC-----CGUGGa----------AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 26522 0.66 0.383397
Target:  5'- uCGCGCCGcgcaagCGcuGCACCUgcgccUCGUGGuCAGu -3'
miRNA:   3'- -GCGCGGCaa----GC--CGUGGA-----AGCGCC-GUC- -5'
28006 3' -59.9 NC_005887.1 + 14570 0.66 0.383397
Target:  5'- gGCGCCGUcgucaUGGCGCuCUaccUCGcCGGCGc -3'
miRNA:   3'- gCGCGGCAa----GCCGUG-GA---AGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 11884 0.66 0.392248
Target:  5'- -uCGUCGUUCGGCAgcgccggcaaCUUCaCGGCGGg -3'
miRNA:   3'- gcGCGGCAAGCCGUg---------GAAGcGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 16027 0.66 0.392248
Target:  5'- aGCGCCGgccaCGGCcugaACCUgcaggacgGCGGCAa -3'
miRNA:   3'- gCGCGGCaa--GCCG----UGGAag------CGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 7453 0.66 0.40123
Target:  5'- gCGCGUCGUgaUCGGCauGCCgUUCGCGaacgaGCGc -3'
miRNA:   3'- -GCGCGGCA--AGCCG--UGG-AAGCGC-----CGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.