miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 21205 0.69 0.267148
Target:  5'- -aCGCCGUcggaUUGGCACUagcaUUCGUGGCGu -3'
miRNA:   3'- gcGCGGCA----AGCCGUGG----AAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 40863 0.69 0.267148
Target:  5'- cCGCGCCGcgCGaGCGCCgcacgcCGuCGGCGu -3'
miRNA:   3'- -GCGCGGCaaGC-CGUGGaa----GC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 36933 0.69 0.273927
Target:  5'- uCGCGCCGgucgcugCGGCGCCgccCGcCGGUu- -3'
miRNA:   3'- -GCGCGGCaa-----GCCGUGGaa-GC-GCCGuc -5'
28006 3' -59.9 NC_005887.1 + 25052 0.69 0.280843
Target:  5'- uGCGCCGaacCGGCGuuUgcgcgCGCGGCGc -3'
miRNA:   3'- gCGCGGCaa-GCCGUggAa----GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 28784 0.69 0.280843
Target:  5'- uCGCGUCG-UCGGcCugCUcggGCGGCAGc -3'
miRNA:   3'- -GCGCGGCaAGCC-GugGAag-CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 35681 0.68 0.29509
Target:  5'- aGCGCgCGaUCGGCgGCCggcuUCGCGGUu- -3'
miRNA:   3'- gCGCG-GCaAGCCG-UGGa---AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 26564 0.68 0.302422
Target:  5'- -cUGCCGcaucgaucugcUUCuGCGCCUUCGCGGCc- -3'
miRNA:   3'- gcGCGGC-----------AAGcCGUGGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 14606 0.68 0.302422
Target:  5'- aCGCGUaCGgccgUCGGCGCCgUCGagggcgcgcucaCGGCAGc -3'
miRNA:   3'- -GCGCG-GCa---AGCCGUGGaAGC------------GCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 40775 0.68 0.302422
Target:  5'- gCGCGCCGccgagcCGGCGgUcgaggUUCGUGGCGGc -3'
miRNA:   3'- -GCGCGGCaa----GCCGUgG-----AAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 23091 0.68 0.302422
Target:  5'- uGCGUCGg-CGGCACCaa-GCGGUAc -3'
miRNA:   3'- gCGCGGCaaGCCGUGGaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 2944 0.68 0.306888
Target:  5'- aGCGCCG--CGGCACCgccgcgaccauccUCGcCGGCGa -3'
miRNA:   3'- gCGCGGCaaGCCGUGGa------------AGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 32526 0.68 0.309893
Target:  5'- cCGCGCUGacCGGCugCgaCGCGuucGCGGg -3'
miRNA:   3'- -GCGCGGCaaGCCGugGaaGCGC---CGUC- -5'
28006 3' -59.9 NC_005887.1 + 14229 0.68 0.317504
Target:  5'- cCGCGCUGUUCGGC------GCGGCAu -3'
miRNA:   3'- -GCGCGGCAAGCCGuggaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 39432 0.67 0.329973
Target:  5'- uGCGCagcuuggcggCGGCGuCgUUCGCGGCGGc -3'
miRNA:   3'- gCGCGgcaa------GCCGU-GgAAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 39148 0.67 0.332351
Target:  5'- aGCGCUcg-CGGC-CCUUCucgcuguccgggcGCGGCAGc -3'
miRNA:   3'- gCGCGGcaaGCCGuGGAAG-------------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 17280 0.67 0.341177
Target:  5'- aGaCGUCGggCGGCGCCg-CGCGcGCAa -3'
miRNA:   3'- gC-GCGGCaaGCCGUGGaaGCGC-CGUc -5'
28006 3' -59.9 NC_005887.1 + 2183 0.67 0.341177
Target:  5'- uCGUGCCG-UCGcGCAgCUcacaCGCGGCGa -3'
miRNA:   3'- -GCGCGGCaAGC-CGUgGAa---GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 28345 0.67 0.346062
Target:  5'- uGCGCCGgcgcggcauuggcUUCGaGCACgaacgcgucgacggCUUCGCGGCu- -3'
miRNA:   3'- gCGCGGC-------------AAGC-CGUG--------------GAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 28198 0.67 0.349346
Target:  5'- uGCGCCGcaUCaGCGCCgcgcgUCuCGGCGGu -3'
miRNA:   3'- gCGCGGCa-AGcCGUGGa----AGcGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 14703 0.67 0.349346
Target:  5'- uCGCGgCGggCGG-GCCgggCGCGGCGa -3'
miRNA:   3'- -GCGCgGCaaGCCgUGGaa-GCGCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.