miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 41498 0.66 0.383397
Target:  5'- aCGCGUCcacgGGCACCUuggcuuucuUCGCGGCc- -3'
miRNA:   3'- -GCGCGGcaagCCGUGGA---------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 26522 0.66 0.383397
Target:  5'- uCGCGCCGcgcaagCGcuGCACCUgcgccUCGUGGuCAGu -3'
miRNA:   3'- -GCGCGGCaa----GC--CGUGGA-----AGCGCC-GUC- -5'
28006 3' -59.9 NC_005887.1 + 4094 0.67 0.374681
Target:  5'- gGCGCaGaUCGGCAUCgagUucgcgcaggacaCGCGGCAGa -3'
miRNA:   3'- gCGCGgCaAGCCGUGGa--A------------GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 2462 0.67 0.374681
Target:  5'- gGCGCCGUcgacgaGGCGCUgaCGCGGa-- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGaaGCGCCguc -5'
28006 3' -59.9 NC_005887.1 + 14961 0.67 0.366099
Target:  5'- aCGCGCCGcacUCGaCGCCUaCGcCGcGCAGg -3'
miRNA:   3'- -GCGCGGCa--AGCcGUGGAaGC-GC-CGUC- -5'
28006 3' -59.9 NC_005887.1 + 37184 0.67 0.366099
Target:  5'- uGCGUCGgcUCGGCGuCCUUCagcuCGGCGu -3'
miRNA:   3'- gCGCGGCa-AGCCGU-GGAAGc---GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 36878 0.67 0.366099
Target:  5'- uGCGCCa-UCGGC-CUgcgUCGUGGUGGa -3'
miRNA:   3'- gCGCGGcaAGCCGuGGa--AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 13898 0.67 0.357654
Target:  5'- uCGUGCgCG-UCGGCAU--UCGUGGCAc -3'
miRNA:   3'- -GCGCG-GCaAGCCGUGgaAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 37333 0.67 0.357654
Target:  5'- aGCGCCGgcacUGGCAUCggUCGCcGCAu -3'
miRNA:   3'- gCGCGGCaa--GCCGUGGa-AGCGcCGUc -5'
28006 3' -59.9 NC_005887.1 + 27604 0.67 0.357654
Target:  5'- aGCGUCGUgucgaaGGCGCUgauaccgUCGCGGUu- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGa------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 34244 0.67 0.357654
Target:  5'- gGCGCC--UCGGCGag--CGCGGCGa -3'
miRNA:   3'- gCGCGGcaAGCCGUggaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 3845 0.67 0.35017
Target:  5'- gGCGCUucuacgUCGGCACCgacgauguguacgGCGGCAGc -3'
miRNA:   3'- gCGCGGca----AGCCGUGGaag----------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 1494 0.67 0.349346
Target:  5'- aCGCGCg---CGGCGgCUUCGcCGGUGGa -3'
miRNA:   3'- -GCGCGgcaaGCCGUgGAAGC-GCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 28198 0.67 0.349346
Target:  5'- uGCGCCGcaUCaGCGCCgcgcgUCuCGGCGGu -3'
miRNA:   3'- gCGCGGCa-AGcCGUGGa----AGcGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 14703 0.67 0.349346
Target:  5'- uCGCGgCGggCGG-GCCgggCGCGGCGa -3'
miRNA:   3'- -GCGCgGCaaGCCgUGGaa-GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 28345 0.67 0.346062
Target:  5'- uGCGCCGgcgcggcauuggcUUCGaGCACgaacgcgucgacggCUUCGCGGCu- -3'
miRNA:   3'- gCGCGGC-------------AAGC-CGUG--------------GAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 17280 0.67 0.341177
Target:  5'- aGaCGUCGggCGGCGCCg-CGCGcGCAa -3'
miRNA:   3'- gC-GCGGCaaGCCGUGGaaGCGC-CGUc -5'
28006 3' -59.9 NC_005887.1 + 2183 0.67 0.341177
Target:  5'- uCGUGCCG-UCGcGCAgCUcacaCGCGGCGa -3'
miRNA:   3'- -GCGCGGCaAGC-CGUgGAa---GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 39148 0.67 0.332351
Target:  5'- aGCGCUcg-CGGC-CCUUCucgcuguccgggcGCGGCAGc -3'
miRNA:   3'- gCGCGGcaaGCCGuGGAAG-------------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 39432 0.67 0.329973
Target:  5'- uGCGCagcuuggcggCGGCGuCgUUCGCGGCGGc -3'
miRNA:   3'- gCGCGgcaa------GCCGU-GgAAGCGCCGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.