miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 37872 1.07 0.000354
Target:  5'- gCGCGCCGUUCGGCACCUUCGCGGCAGc -3'
miRNA:   3'- -GCGCGGCAAGCCGUGGAAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 37458 0.77 0.077024
Target:  5'- uCGCGCCGgcccUCGGCgACCaucgUCGCGaGCGGa -3'
miRNA:   3'- -GCGCGGCa---AGCCG-UGGa---AGCGC-CGUC- -5'
28006 3' -59.9 NC_005887.1 + 25822 0.74 0.110912
Target:  5'- aCGCGCCcacUCGGCGCCg--GCGGCGa -3'
miRNA:   3'- -GCGCGGca-AGCCGUGGaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 41804 0.74 0.114031
Target:  5'- uCGCGCUGUaucCGGCGCggcgCGCGGCGGc -3'
miRNA:   3'- -GCGCGGCAa--GCCGUGgaa-GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 14547 0.74 0.123889
Target:  5'- gCGCGUCGaUCGGCAUg-UCGCGcGCGGa -3'
miRNA:   3'- -GCGCGGCaAGCCGUGgaAGCGC-CGUC- -5'
28006 3' -59.9 NC_005887.1 + 31224 0.73 0.130894
Target:  5'- uGCGCCGccaCGGCGCCUcggccagcuUCGCGcGCAc -3'
miRNA:   3'- gCGCGGCaa-GCCGUGGA---------AGCGC-CGUc -5'
28006 3' -59.9 NC_005887.1 + 38828 0.73 0.138263
Target:  5'- gGCGCUGcaUCGGCACg-UUGCGGUAGa -3'
miRNA:   3'- gCGCGGCa-AGCCGUGgaAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 18951 0.73 0.142088
Target:  5'- aCGCGCUGcugCGGCugCca-GCGGCAGc -3'
miRNA:   3'- -GCGCGGCaa-GCCGugGaagCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 37725 0.73 0.150031
Target:  5'- uCGCGCCGg-CGGcCACCggcgcCGCGGCGa -3'
miRNA:   3'- -GCGCGGCaaGCC-GUGGaa---GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 30147 0.72 0.154152
Target:  5'- gCGCGcCCGgcgCGGCGcuguCCUUCGCGGUc- -3'
miRNA:   3'- -GCGC-GGCaa-GCCGU----GGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 27409 0.72 0.167138
Target:  5'- gCGCGUCGUaCGGCAgCg-CGCGGCGu -3'
miRNA:   3'- -GCGCGGCAaGCCGUgGaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 41940 0.71 0.185972
Target:  5'- gCGgGCgGcgCGGCGCguCUUCGCGGCGc -3'
miRNA:   3'- -GCgCGgCaaGCCGUG--GAAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 33751 0.71 0.190965
Target:  5'- gCGCGCCGgccuucaCGaGCAUCUggCGCGGCGu -3'
miRNA:   3'- -GCGCGGCaa-----GC-CGUGGAa-GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 28337 0.71 0.201304
Target:  5'- gCGCGCCGg-CGGUugCggaggcgCGCGGCGc -3'
miRNA:   3'- -GCGCGGCaaGCCGugGaa-----GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 34826 0.71 0.206654
Target:  5'- uCGCGUCGgccuucUUGGCccaACCUUCGaCGGCAa -3'
miRNA:   3'- -GCGCGGCa-----AGCCG---UGGAAGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 33343 0.7 0.21829
Target:  5'- aGCGCCGUUugcacuucucccgacUGcagcggaugugcacGCGCCggCGCGGCAGg -3'
miRNA:   3'- gCGCGGCAA---------------GC--------------CGUGGaaGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 17725 0.7 0.235274
Target:  5'- gGUGCCGUucuucaagacgcUCGGCACggccgCGCGGCuGa -3'
miRNA:   3'- gCGCGGCA------------AGCCGUGgaa--GCGCCGuC- -5'
28006 3' -59.9 NC_005887.1 + 40501 0.7 0.238312
Target:  5'- gGCGCgacgucgUGUUCGGCAUCcaccacgcggcgCGCGGCAGc -3'
miRNA:   3'- gCGCG-------GCAAGCCGUGGaa----------GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 1477 0.7 0.241383
Target:  5'- cCGaCGCCGacggcgugCGGCGCUcgCGCGGCGc -3'
miRNA:   3'- -GC-GCGGCaa------GCCGUGGaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 35834 0.69 0.260505
Target:  5'- uGCGCCGcgUCGGCguagaucaucGCCUgcggauugCGCucGGCAGa -3'
miRNA:   3'- gCGCGGCa-AGCCG----------UGGAa-------GCG--CCGUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.