Results 1 - 20 of 73 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 37872 | 1.07 | 0.000354 |
Target: 5'- gCGCGCCGUUCGGCACCUUCGCGGCAGc -3' miRNA: 3'- -GCGCGGCAAGCCGUGGAAGCGCCGUC- -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 37458 | 0.77 | 0.077024 |
Target: 5'- uCGCGCCGgcccUCGGCgACCaucgUCGCGaGCGGa -3' miRNA: 3'- -GCGCGGCa---AGCCG-UGGa---AGCGC-CGUC- -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 25822 | 0.74 | 0.110912 |
Target: 5'- aCGCGCCcacUCGGCGCCg--GCGGCGa -3' miRNA: 3'- -GCGCGGca-AGCCGUGGaagCGCCGUc -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 41804 | 0.74 | 0.114031 |
Target: 5'- uCGCGCUGUaucCGGCGCggcgCGCGGCGGc -3' miRNA: 3'- -GCGCGGCAa--GCCGUGgaa-GCGCCGUC- -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 14547 | 0.74 | 0.123889 |
Target: 5'- gCGCGUCGaUCGGCAUg-UCGCGcGCGGa -3' miRNA: 3'- -GCGCGGCaAGCCGUGgaAGCGC-CGUC- -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 31224 | 0.73 | 0.130894 |
Target: 5'- uGCGCCGccaCGGCGCCUcggccagcuUCGCGcGCAc -3' miRNA: 3'- gCGCGGCaa-GCCGUGGA---------AGCGC-CGUc -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 38828 | 0.73 | 0.138263 |
Target: 5'- gGCGCUGcaUCGGCACg-UUGCGGUAGa -3' miRNA: 3'- gCGCGGCa-AGCCGUGgaAGCGCCGUC- -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 18951 | 0.73 | 0.142088 |
Target: 5'- aCGCGCUGcugCGGCugCca-GCGGCAGc -3' miRNA: 3'- -GCGCGGCaa-GCCGugGaagCGCCGUC- -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 37725 | 0.73 | 0.150031 |
Target: 5'- uCGCGCCGg-CGGcCACCggcgcCGCGGCGa -3' miRNA: 3'- -GCGCGGCaaGCC-GUGGaa---GCGCCGUc -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 30147 | 0.72 | 0.154152 |
Target: 5'- gCGCGcCCGgcgCGGCGcuguCCUUCGCGGUc- -3' miRNA: 3'- -GCGC-GGCaa-GCCGU----GGAAGCGCCGuc -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 27409 | 0.72 | 0.167138 |
Target: 5'- gCGCGUCGUaCGGCAgCg-CGCGGCGu -3' miRNA: 3'- -GCGCGGCAaGCCGUgGaaGCGCCGUc -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 41940 | 0.71 | 0.185972 |
Target: 5'- gCGgGCgGcgCGGCGCguCUUCGCGGCGc -3' miRNA: 3'- -GCgCGgCaaGCCGUG--GAAGCGCCGUc -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 33751 | 0.71 | 0.190965 |
Target: 5'- gCGCGCCGgccuucaCGaGCAUCUggCGCGGCGu -3' miRNA: 3'- -GCGCGGCaa-----GC-CGUGGAa-GCGCCGUc -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 28337 | 0.71 | 0.201304 |
Target: 5'- gCGCGCCGg-CGGUugCggaggcgCGCGGCGc -3' miRNA: 3'- -GCGCGGCaaGCCGugGaa-----GCGCCGUc -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 34826 | 0.71 | 0.206654 |
Target: 5'- uCGCGUCGgccuucUUGGCccaACCUUCGaCGGCAa -3' miRNA: 3'- -GCGCGGCa-----AGCCG---UGGAAGC-GCCGUc -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 33343 | 0.7 | 0.21829 |
Target: 5'- aGCGCCGUUugcacuucucccgacUGcagcggaugugcacGCGCCggCGCGGCAGg -3' miRNA: 3'- gCGCGGCAA---------------GC--------------CGUGGaaGCGCCGUC- -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 17725 | 0.7 | 0.235274 |
Target: 5'- gGUGCCGUucuucaagacgcUCGGCACggccgCGCGGCuGa -3' miRNA: 3'- gCGCGGCA------------AGCCGUGgaa--GCGCCGuC- -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 40501 | 0.7 | 0.238312 |
Target: 5'- gGCGCgacgucgUGUUCGGCAUCcaccacgcggcgCGCGGCAGc -3' miRNA: 3'- gCGCG-------GCAAGCCGUGGaa----------GCGCCGUC- -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 1477 | 0.7 | 0.241383 |
Target: 5'- cCGaCGCCGacggcgugCGGCGCUcgCGCGGCGc -3' miRNA: 3'- -GC-GCGGCaa------GCCGUGGaaGCGCCGUc -5' |
|||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 35834 | 0.69 | 0.260505 |
Target: 5'- uGCGCCGcgUCGGCguagaucaucGCCUgcggauugCGCucGGCAGa -3' miRNA: 3'- gCGCGGCa-AGCCG----------UGGAa-------GCG--CCGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home