miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 33751 0.71 0.190965
Target:  5'- gCGCGCCGgccuucaCGaGCAUCUggCGCGGCGu -3'
miRNA:   3'- -GCGCGGCaa-----GC-CGUGGAa-GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 13898 0.67 0.357654
Target:  5'- uCGUGCgCG-UCGGCAU--UCGUGGCAc -3'
miRNA:   3'- -GCGCG-GCaAGCCGUGgaAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 37333 0.67 0.357654
Target:  5'- aGCGCCGgcacUGGCAUCggUCGCcGCAu -3'
miRNA:   3'- gCGCGGCaa--GCCGUGGa-AGCGcCGUc -5'
28006 3' -59.9 NC_005887.1 + 3845 0.67 0.35017
Target:  5'- gGCGCUucuacgUCGGCACCgacgauguguacgGCGGCAGc -3'
miRNA:   3'- gCGCGGca----AGCCGUGGaag----------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 28198 0.67 0.349346
Target:  5'- uGCGCCGcaUCaGCGCCgcgcgUCuCGGCGGu -3'
miRNA:   3'- gCGCGGCa-AGcCGUGGa----AGcGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 14703 0.67 0.349346
Target:  5'- uCGCGgCGggCGG-GCCgggCGCGGCGa -3'
miRNA:   3'- -GCGCgGCaaGCCgUGGaa-GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 28345 0.67 0.346062
Target:  5'- uGCGCCGgcgcggcauuggcUUCGaGCACgaacgcgucgacggCUUCGCGGCu- -3'
miRNA:   3'- gCGCGGC-------------AAGC-CGUG--------------GAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 17280 0.67 0.341177
Target:  5'- aGaCGUCGggCGGCGCCg-CGCGcGCAa -3'
miRNA:   3'- gC-GCGGCaaGCCGUGGaaGCGC-CGUc -5'
28006 3' -59.9 NC_005887.1 + 14229 0.68 0.317504
Target:  5'- cCGCGCUGUUCGGC------GCGGCAu -3'
miRNA:   3'- -GCGCGGCAAGCCGuggaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 2944 0.68 0.306888
Target:  5'- aGCGCCG--CGGCACCgccgcgaccauccUCGcCGGCGa -3'
miRNA:   3'- gCGCGGCaaGCCGUGGa------------AGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 40775 0.68 0.302422
Target:  5'- gCGCGCCGccgagcCGGCGgUcgaggUUCGUGGCGGc -3'
miRNA:   3'- -GCGCGGCaa----GCCGUgG-----AAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 14606 0.68 0.302422
Target:  5'- aCGCGUaCGgccgUCGGCGCCgUCGagggcgcgcucaCGGCAGc -3'
miRNA:   3'- -GCGCG-GCa---AGCCGUGGaAGC------------GCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 35681 0.68 0.29509
Target:  5'- aGCGCgCGaUCGGCgGCCggcuUCGCGGUu- -3'
miRNA:   3'- gCGCG-GCaAGCCG-UGGa---AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 35834 0.69 0.260505
Target:  5'- uGCGCCGcgUCGGCguagaucaucGCCUgcggauugCGCucGGCAGa -3'
miRNA:   3'- gCGCGGCa-AGCCG----------UGGAa-------GCG--CCGUC- -5'
28006 3' -59.9 NC_005887.1 + 1477 0.7 0.241383
Target:  5'- cCGaCGCCGacggcgugCGGCGCUcgCGCGGCGc -3'
miRNA:   3'- -GC-GCGGCaa------GCCGUGGaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 40501 0.7 0.238312
Target:  5'- gGCGCgacgucgUGUUCGGCAUCcaccacgcggcgCGCGGCAGc -3'
miRNA:   3'- gCGCG-------GCAAGCCGUGGaa----------GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 17725 0.7 0.235274
Target:  5'- gGUGCCGUucuucaagacgcUCGGCACggccgCGCGGCuGa -3'
miRNA:   3'- gCGCGGCA------------AGCCGUGgaa--GCGCCGuC- -5'
28006 3' -59.9 NC_005887.1 + 33343 0.7 0.21829
Target:  5'- aGCGCCGUUugcacuucucccgacUGcagcggaugugcacGCGCCggCGCGGCAGg -3'
miRNA:   3'- gCGCGGCAA---------------GC--------------CGUGGaaGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 34826 0.71 0.206654
Target:  5'- uCGCGUCGgccuucUUGGCccaACCUUCGaCGGCAa -3'
miRNA:   3'- -GCGCGGCa-----AGCCG---UGGAAGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 14547 0.74 0.123889
Target:  5'- gCGCGUCGaUCGGCAUg-UCGCGcGCGGa -3'
miRNA:   3'- -GCGCGGCaAGCCGUGgaAGCGC-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.