miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 27838 0.66 0.419582
Target:  5'- cCGCGCCugcaagCGGacCACCaagcacCGCGGCGGg -3'
miRNA:   3'- -GCGCGGcaa---GCC--GUGGaa----GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 10224 0.66 0.428947
Target:  5'- cCGCGCCGgaCGGCGCguCUgaugaccUGUGGguGa -3'
miRNA:   3'- -GCGCGGCaaGCCGUG--GAa------GCGCCguC- -5'
28006 3' -59.9 NC_005887.1 + 2432 0.66 0.428947
Target:  5'- aCGCGCC---CGGCucgAUCUgCGCGGCAc -3'
miRNA:   3'- -GCGCGGcaaGCCG---UGGAaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 26522 0.66 0.383397
Target:  5'- uCGCGCCGcgcaagCGcuGCACCUgcgccUCGUGGuCAGu -3'
miRNA:   3'- -GCGCGGCaa----GC--CGUGGA-----AGCGCC-GUC- -5'
28006 3' -59.9 NC_005887.1 + 4920 0.66 0.428947
Target:  5'- aGCGCCGcgcuccacUCcGCACCUggcgUGCaGGCAGu -3'
miRNA:   3'- gCGCGGCa-------AGcCGUGGAa---GCG-CCGUC- -5'
28006 3' -59.9 NC_005887.1 + 36589 0.66 0.419582
Target:  5'- uCGCgGCCa----GCGCCUUCGCGGCc- -3'
miRNA:   3'- -GCG-CGGcaagcCGUGGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 25497 0.66 0.410343
Target:  5'- cCGCGCCG--CGGUACaCcUCGCGGa-- -3'
miRNA:   3'- -GCGCGGCaaGCCGUG-GaAGCGCCguc -5'
28006 3' -59.9 NC_005887.1 + 15273 0.66 0.407596
Target:  5'- aGCGCagcaaGcgCGGCACCgagUUcgugaagaagucggGCGGCAGc -3'
miRNA:   3'- gCGCGg----CaaGCCGUGGa--AG--------------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 23935 0.66 0.40123
Target:  5'- aGCGUCGUgcugacgaCGGCGCC---GCGGCGu -3'
miRNA:   3'- gCGCGGCAa-------GCCGUGGaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 6049 0.66 0.428947
Target:  5'- gGUGCUGgu-GGCAgCggCGCGGCAc -3'
miRNA:   3'- gCGCGGCaagCCGUgGaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 12063 0.66 0.419582
Target:  5'- cCGCGCUGcagcaggUCGGCACg-UCGCucGGuCAGg -3'
miRNA:   3'- -GCGCGGCa------AGCCGUGgaAGCG--CC-GUC- -5'
28006 3' -59.9 NC_005887.1 + 41498 0.66 0.383397
Target:  5'- aCGCGUCcacgGGCACCUuggcuuucuUCGCGGCc- -3'
miRNA:   3'- -GCGCGGcaagCCGUGGA---------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 16027 0.66 0.392248
Target:  5'- aGCGCCGgccaCGGCcugaACCUgcaggacgGCGGCAa -3'
miRNA:   3'- gCGCGGCaa--GCCG----UGGAag------CGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 28916 0.66 0.410343
Target:  5'- aCGUGCUGagCGGUgcGCCgcucgUCGCaGCAGc -3'
miRNA:   3'- -GCGCGGCaaGCCG--UGGa----AGCGcCGUC- -5'
28006 3' -59.9 NC_005887.1 + 27786 0.66 0.383397
Target:  5'- aGCGCCaugacgaCGGCGCCgaCGCaGGCGa -3'
miRNA:   3'- gCGCGGcaa----GCCGUGGaaGCG-CCGUc -5'
28006 3' -59.9 NC_005887.1 + 11884 0.66 0.392248
Target:  5'- -uCGUCGUUCGGCAgcgccggcaaCUUCaCGGCGGg -3'
miRNA:   3'- gcGCGGCAAGCCGUg---------GAAGcGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 7453 0.66 0.40123
Target:  5'- gCGCGUCGUgaUCGGCauGCCgUUCGCGaacgaGCGc -3'
miRNA:   3'- -GCGCGGCA--AGCCG--UGG-AAGCGC-----CGUc -5'
28006 3' -59.9 NC_005887.1 + 23259 0.66 0.419582
Target:  5'- gCGCGCaaaa-GGCGCagcUCGUGGCGGu -3'
miRNA:   3'- -GCGCGgcaagCCGUGga-AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 41573 0.66 0.419582
Target:  5'- aGCGCCGagacguuccugUCGGCcagcggcgGCCcaggUGCGGCGGc -3'
miRNA:   3'- gCGCGGCa----------AGCCG--------UGGaa--GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 37596 0.66 0.383397
Target:  5'- cCGCGCuCG-UCGcaaaaGCACCgccgguauugcUCGCGGCGGu -3'
miRNA:   3'- -GCGCG-GCaAGC-----CGUGGa----------AGCGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.