miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 2432 0.66 0.428947
Target:  5'- aCGCGCC---CGGCucgAUCUgCGCGGCAc -3'
miRNA:   3'- -GCGCGGcaaGCCG---UGGAaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 2183 0.67 0.341177
Target:  5'- uCGUGCCG-UCGcGCAgCUcacaCGCGGCGa -3'
miRNA:   3'- -GCGCGGCaAGC-CGUgGAa---GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 39432 0.67 0.329973
Target:  5'- uGCGCagcuuggcggCGGCGuCgUUCGCGGCGGc -3'
miRNA:   3'- gCGCGgcaa------GCCGU-GgAAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 37872 1.07 0.000354
Target:  5'- gCGCGCCGUUCGGCACCUUCGCGGCAGc -3'
miRNA:   3'- -GCGCGGCAAGCCGUGGAAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 25497 0.66 0.410343
Target:  5'- cCGCGCCG--CGGUACaCcUCGCGGa-- -3'
miRNA:   3'- -GCGCGGCaaGCCGUG-GaAGCGCCguc -5'
28006 3' -59.9 NC_005887.1 + 28916 0.66 0.410343
Target:  5'- aCGUGCUGagCGGUgcGCCgcucgUCGCaGCAGc -3'
miRNA:   3'- -GCGCGGCaaGCCG--UGGa----AGCGcCGUC- -5'
28006 3' -59.9 NC_005887.1 + 23935 0.66 0.40123
Target:  5'- aGCGUCGUgcugacgaCGGCGCC---GCGGCGu -3'
miRNA:   3'- gCGCGGCAa-------GCCGUGGaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 16027 0.66 0.392248
Target:  5'- aGCGCCGgccaCGGCcugaACCUgcaggacgGCGGCAa -3'
miRNA:   3'- gCGCGGCaa--GCCG----UGGAag------CGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 26522 0.66 0.383397
Target:  5'- uCGCGCCGcgcaagCGcuGCACCUgcgccUCGUGGuCAGu -3'
miRNA:   3'- -GCGCGGCaa----GC--CGUGGA-----AGCGCC-GUC- -5'
28006 3' -59.9 NC_005887.1 + 1494 0.67 0.349346
Target:  5'- aCGCGCg---CGGCGgCUUCGcCGGUGGa -3'
miRNA:   3'- -GCGCGgcaaGCCGUgGAAGC-GCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 14570 0.66 0.383397
Target:  5'- gGCGCCGUcgucaUGGCGCuCUaccUCGcCGGCGc -3'
miRNA:   3'- gCGCGGCAa----GCCGUG-GA---AGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 41498 0.66 0.383397
Target:  5'- aCGCGUCcacgGGCACCUuggcuuucuUCGCGGCc- -3'
miRNA:   3'- -GCGCGGcaagCCGUGGA---------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 4920 0.66 0.428947
Target:  5'- aGCGCCGcgcuccacUCcGCACCUggcgUGCaGGCAGu -3'
miRNA:   3'- gCGCGGCa-------AGcCGUGGAa---GCG-CCGUC- -5'
28006 3' -59.9 NC_005887.1 + 36878 0.67 0.366099
Target:  5'- uGCGCCa-UCGGC-CUgcgUCGUGGUGGa -3'
miRNA:   3'- gCGCGGcaAGCCGuGGa--AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 27838 0.66 0.419582
Target:  5'- cCGCGCCugcaagCGGacCACCaagcacCGCGGCGGg -3'
miRNA:   3'- -GCGCGGcaa---GCC--GUGGaa----GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 37596 0.66 0.383397
Target:  5'- cCGCGCuCG-UCGcaaaaGCACCgccgguauugcUCGCGGCGGu -3'
miRNA:   3'- -GCGCG-GCaAGC-----CGUGGa----------AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 34244 0.67 0.357654
Target:  5'- gGCGCC--UCGGCGag--CGCGGCGa -3'
miRNA:   3'- gCGCGGcaAGCCGUggaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 39148 0.67 0.332351
Target:  5'- aGCGCUcg-CGGC-CCUUCucgcuguccgggcGCGGCAGc -3'
miRNA:   3'- gCGCGGcaaGCCGuGGAAG-------------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 36589 0.66 0.419582
Target:  5'- uCGCgGCCa----GCGCCUUCGCGGCc- -3'
miRNA:   3'- -GCG-CGGcaagcCGUGGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 15273 0.66 0.407596
Target:  5'- aGCGCagcaaGcgCGGCACCgagUUcgugaagaagucggGCGGCAGc -3'
miRNA:   3'- gCGCGg----CaaGCCGUGGa--AG--------------CGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.