miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 26564 0.68 0.302422
Target:  5'- -cUGCCGcaucgaucugcUUCuGCGCCUUCGCGGCc- -3'
miRNA:   3'- gcGCGGC-----------AAGcCGUGGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 26522 0.66 0.383397
Target:  5'- uCGCGCCGcgcaagCGcuGCACCUgcgccUCGUGGuCAGu -3'
miRNA:   3'- -GCGCGGCaa----GC--CGUGGA-----AGCGCC-GUC- -5'
28006 3' -59.9 NC_005887.1 + 38828 0.73 0.138263
Target:  5'- gGCGCUGcaUCGGCACg-UUGCGGUAGa -3'
miRNA:   3'- gCGCGGCa-AGCCGUGgaAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 21205 0.69 0.267148
Target:  5'- -aCGCCGUcggaUUGGCACUagcaUUCGUGGCGu -3'
miRNA:   3'- gcGCGGCA----AGCCGUGG----AAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 39432 0.67 0.329973
Target:  5'- uGCGCagcuuggcggCGGCGuCgUUCGCGGCGGc -3'
miRNA:   3'- gCGCGgcaa------GCCGU-GgAAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 41498 0.66 0.383397
Target:  5'- aCGCGUCcacgGGCACCUuggcuuucuUCGCGGCc- -3'
miRNA:   3'- -GCGCGGcaagCCGUGGA---------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 40863 0.69 0.267148
Target:  5'- cCGCGCCGcgCGaGCGCCgcacgcCGuCGGCGu -3'
miRNA:   3'- -GCGCGGCaaGC-CGUGGaa----GC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 37596 0.66 0.383397
Target:  5'- cCGCGCuCG-UCGcaaaaGCACCgccgguauugcUCGCGGCGGu -3'
miRNA:   3'- -GCGCG-GCaAGC-----CGUGGa----------AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 16027 0.66 0.392248
Target:  5'- aGCGCCGgccaCGGCcugaACCUgcaggacgGCGGCAa -3'
miRNA:   3'- gCGCGGCaa--GCCG----UGGAag------CGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 1494 0.67 0.349346
Target:  5'- aCGCGCg---CGGCGgCUUCGcCGGUGGa -3'
miRNA:   3'- -GCGCGgcaaGCCGUgGAAGC-GCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 32526 0.68 0.309893
Target:  5'- cCGCGCUGacCGGCugCgaCGCGuucGCGGg -3'
miRNA:   3'- -GCGCGGCaaGCCGugGaaGCGC---CGUC- -5'
28006 3' -59.9 NC_005887.1 + 28784 0.69 0.280843
Target:  5'- uCGCGUCG-UCGGcCugCUcggGCGGCAGc -3'
miRNA:   3'- -GCGCGGCaAGCC-GugGAag-CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 39148 0.67 0.332351
Target:  5'- aGCGCUcg-CGGC-CCUUCucgcuguccgggcGCGGCAGc -3'
miRNA:   3'- gCGCGGcaaGCCGuGGAAG-------------CGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 2183 0.67 0.341177
Target:  5'- uCGUGCCG-UCGcGCAgCUcacaCGCGGCGa -3'
miRNA:   3'- -GCGCGGCaAGC-CGUgGAa---GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 34244 0.67 0.357654
Target:  5'- gGCGCC--UCGGCGag--CGCGGCGa -3'
miRNA:   3'- gCGCGGcaAGCCGUggaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 19059 0.66 0.383397
Target:  5'- gGCGuuGUucuUCGGCGCgggcUGCGGCAa -3'
miRNA:   3'- gCGCggCA---AGCCGUGgaa-GCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 37458 0.77 0.077024
Target:  5'- uCGCGCCGgcccUCGGCgACCaucgUCGCGaGCGGa -3'
miRNA:   3'- -GCGCGGCa---AGCCG-UGGa---AGCGC-CGUC- -5'
28006 3' -59.9 NC_005887.1 + 31224 0.73 0.130894
Target:  5'- uGCGCCGccaCGGCGCCUcggccagcuUCGCGcGCAc -3'
miRNA:   3'- gCGCGGCaa-GCCGUGGA---------AGCGC-CGUc -5'
28006 3' -59.9 NC_005887.1 + 30147 0.72 0.154152
Target:  5'- gCGCGcCCGgcgCGGCGcuguCCUUCGCGGUc- -3'
miRNA:   3'- -GCGC-GGCaa-GCCGU----GGAAGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 28337 0.71 0.201304
Target:  5'- gCGCGCCGg-CGGUugCggaggcgCGCGGCGc -3'
miRNA:   3'- -GCGCGGCaaGCCGugGaa-----GCGCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.