miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28006 3' -59.9 NC_005887.1 + 40775 0.68 0.302422
Target:  5'- gCGCGCCGccgagcCGGCGgUcgaggUUCGUGGCGGc -3'
miRNA:   3'- -GCGCGGCaa----GCCGUgG-----AAGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 34826 0.71 0.206654
Target:  5'- uCGCGUCGgccuucUUGGCccaACCUUCGaCGGCAa -3'
miRNA:   3'- -GCGCGGCa-----AGCCG---UGGAAGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 1477 0.7 0.241383
Target:  5'- cCGaCGCCGacggcgugCGGCGCUcgCGCGGCGc -3'
miRNA:   3'- -GC-GCGGCaa------GCCGUGGaaGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 14606 0.68 0.302422
Target:  5'- aCGCGUaCGgccgUCGGCGCCgUCGagggcgcgcucaCGGCAGc -3'
miRNA:   3'- -GCGCG-GCa---AGCCGUGGaAGC------------GCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 40501 0.7 0.238312
Target:  5'- gGCGCgacgucgUGUUCGGCAUCcaccacgcggcgCGCGGCAGc -3'
miRNA:   3'- gCGCG-------GCAAGCCGUGGaa----------GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 12063 0.66 0.419582
Target:  5'- cCGCGCUGcagcaggUCGGCACg-UCGCucGGuCAGg -3'
miRNA:   3'- -GCGCGGCa------AGCCGUGgaAGCG--CC-GUC- -5'
28006 3' -59.9 NC_005887.1 + 2944 0.68 0.306888
Target:  5'- aGCGCCG--CGGCACCgccgcgaccauccUCGcCGGCGa -3'
miRNA:   3'- gCGCGGCaaGCCGUGGa------------AGC-GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 14229 0.68 0.317504
Target:  5'- cCGCGCUGUUCGGC------GCGGCAu -3'
miRNA:   3'- -GCGCGGCAAGCCGuggaagCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 17280 0.67 0.341177
Target:  5'- aGaCGUCGggCGGCGCCg-CGCGcGCAa -3'
miRNA:   3'- gC-GCGGCaaGCCGUGGaaGCGC-CGUc -5'
28006 3' -59.9 NC_005887.1 + 23259 0.66 0.419582
Target:  5'- gCGCGCaaaa-GGCGCagcUCGUGGCGGu -3'
miRNA:   3'- -GCGCGgcaagCCGUGga-AGCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 7453 0.66 0.40123
Target:  5'- gCGCGUCGUgaUCGGCauGCCgUUCGCGaacgaGCGc -3'
miRNA:   3'- -GCGCGGCA--AGCCG--UGG-AAGCGC-----CGUc -5'
28006 3' -59.9 NC_005887.1 + 11884 0.66 0.392248
Target:  5'- -uCGUCGUUCGGCAgcgccggcaaCUUCaCGGCGGg -3'
miRNA:   3'- gcGCGGCAAGCCGUg---------GAAGcGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 27786 0.66 0.383397
Target:  5'- aGCGCCaugacgaCGGCGCCgaCGCaGGCGa -3'
miRNA:   3'- gCGCGGcaa----GCCGUGGaaGCG-CCGUc -5'
28006 3' -59.9 NC_005887.1 + 4094 0.67 0.374681
Target:  5'- gGCGCaGaUCGGCAUCgagUucgcgcaggacaCGCGGCAGa -3'
miRNA:   3'- gCGCGgCaAGCCGUGGa--A------------GCGCCGUC- -5'
28006 3' -59.9 NC_005887.1 + 14961 0.67 0.366099
Target:  5'- aCGCGCCGcacUCGaCGCCUaCGcCGcGCAGg -3'
miRNA:   3'- -GCGCGGCa--AGCcGUGGAaGC-GC-CGUC- -5'
28006 3' -59.9 NC_005887.1 + 2462 0.67 0.374681
Target:  5'- gGCGCCGUcgacgaGGCGCUgaCGCGGa-- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGaaGCGCCguc -5'
28006 3' -59.9 NC_005887.1 + 37184 0.67 0.366099
Target:  5'- uGCGUCGgcUCGGCGuCCUUCagcuCGGCGu -3'
miRNA:   3'- gCGCGGCa-AGCCGU-GGAAGc---GCCGUc -5'
28006 3' -59.9 NC_005887.1 + 27604 0.67 0.357654
Target:  5'- aGCGUCGUgucgaaGGCGCUgauaccgUCGCGGUu- -3'
miRNA:   3'- gCGCGGCAag----CCGUGGa------AGCGCCGuc -5'
28006 3' -59.9 NC_005887.1 + 13898 0.67 0.357654
Target:  5'- uCGUGCgCG-UCGGCAU--UCGUGGCAc -3'
miRNA:   3'- -GCGCG-GCaAGCCGUGgaAGCGCCGUc -5'
28006 3' -59.9 NC_005887.1 + 28345 0.67 0.346062
Target:  5'- uGCGCCGgcgcggcauuggcUUCGaGCACgaacgcgucgacggCUUCGCGGCu- -3'
miRNA:   3'- gCGCGGC-------------AAGC-CGUG--------------GAAGCGCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.