Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28006 | 3' | -59.9 | NC_005887.1 | + | 26564 | 0.68 | 0.302422 |
Target: 5'- -cUGCCGcaucgaucugcUUCuGCGCCUUCGCGGCc- -3' miRNA: 3'- gcGCGGC-----------AAGcCGUGGAAGCGCCGuc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 23091 | 0.68 | 0.302422 |
Target: 5'- uGCGUCGg-CGGCACCaa-GCGGUAc -3' miRNA: 3'- gCGCGGCaaGCCGUGGaagCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 32526 | 0.68 | 0.309893 |
Target: 5'- cCGCGCUGacCGGCugCgaCGCGuucGCGGg -3' miRNA: 3'- -GCGCGGCaaGCCGugGaaGCGC---CGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 35681 | 0.68 | 0.29509 |
Target: 5'- aGCGCgCGaUCGGCgGCCggcuUCGCGGUu- -3' miRNA: 3'- gCGCG-GCaAGCCG-UGGa---AGCGCCGuc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14606 | 0.68 | 0.302422 |
Target: 5'- aCGCGUaCGgccgUCGGCGCCgUCGagggcgcgcucaCGGCAGc -3' miRNA: 3'- -GCGCG-GCa---AGCCGUGGaAGC------------GCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 40775 | 0.68 | 0.302422 |
Target: 5'- gCGCGCCGccgagcCGGCGgUcgaggUUCGUGGCGGc -3' miRNA: 3'- -GCGCGGCaa----GCCGUgG-----AAGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 2944 | 0.68 | 0.306888 |
Target: 5'- aGCGCCG--CGGCACCgccgcgaccauccUCGcCGGCGa -3' miRNA: 3'- gCGCGGCaaGCCGUGGa------------AGC-GCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 14229 | 0.68 | 0.317504 |
Target: 5'- cCGCGCUGUUCGGC------GCGGCAu -3' miRNA: 3'- -GCGCGGCAAGCCGuggaagCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 40863 | 0.69 | 0.267148 |
Target: 5'- cCGCGCCGcgCGaGCGCCgcacgcCGuCGGCGu -3' miRNA: 3'- -GCGCGGCaaGC-CGUGGaa----GC-GCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 36933 | 0.69 | 0.273927 |
Target: 5'- uCGCGCCGgucgcugCGGCGCCgccCGcCGGUu- -3' miRNA: 3'- -GCGCGGCaa-----GCCGUGGaa-GC-GCCGuc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 25052 | 0.69 | 0.280843 |
Target: 5'- uGCGCCGaacCGGCGuuUgcgcgCGCGGCGc -3' miRNA: 3'- gCGCGGCaa-GCCGUggAa----GCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 28784 | 0.69 | 0.280843 |
Target: 5'- uCGCGUCG-UCGGcCugCUcggGCGGCAGc -3' miRNA: 3'- -GCGCGGCaAGCC-GugGAag-CGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 35834 | 0.69 | 0.260505 |
Target: 5'- uGCGCCGcgUCGGCguagaucaucGCCUgcggauugCGCucGGCAGa -3' miRNA: 3'- gCGCGGCa-AGCCG----------UGGAa-------GCG--CCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 21205 | 0.69 | 0.267148 |
Target: 5'- -aCGCCGUcggaUUGGCACUagcaUUCGUGGCGu -3' miRNA: 3'- gcGCGGCA----AGCCGUGG----AAGCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 33343 | 0.7 | 0.21829 |
Target: 5'- aGCGCCGUUugcacuucucccgacUGcagcggaugugcacGCGCCggCGCGGCAGg -3' miRNA: 3'- gCGCGGCAA---------------GC--------------CGUGGaaGCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 40501 | 0.7 | 0.238312 |
Target: 5'- gGCGCgacgucgUGUUCGGCAUCcaccacgcggcgCGCGGCAGc -3' miRNA: 3'- gCGCG-------GCAAGCCGUGGaa----------GCGCCGUC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 1477 | 0.7 | 0.241383 |
Target: 5'- cCGaCGCCGacggcgugCGGCGCUcgCGCGGCGc -3' miRNA: 3'- -GC-GCGGCaa------GCCGUGGaaGCGCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 17725 | 0.7 | 0.235274 |
Target: 5'- gGUGCCGUucuucaagacgcUCGGCACggccgCGCGGCuGa -3' miRNA: 3'- gCGCGGCA------------AGCCGUGgaa--GCGCCGuC- -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 34826 | 0.71 | 0.206654 |
Target: 5'- uCGCGUCGgccuucUUGGCccaACCUUCGaCGGCAa -3' miRNA: 3'- -GCGCGGCa-----AGCCG---UGGAAGC-GCCGUc -5' |
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28006 | 3' | -59.9 | NC_005887.1 | + | 33751 | 0.71 | 0.190965 |
Target: 5'- gCGCGCCGgccuucaCGaGCAUCUggCGCGGCGu -3' miRNA: 3'- -GCGCGGCaa-----GC-CGUGGAa-GCGCCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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