miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28008 3' -55.1 NC_005887.1 + 205 0.67 0.643209
Target:  5'- gUUCGCCCcGCugcuCugCGAAUgcGCGCc -3'
miRNA:   3'- gGAGCGGGcUGu---GugGCUUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 1310 0.66 0.665314
Target:  5'- uUCUCgaGCUCGACcuGCACCGcGCg-GCGCc -3'
miRNA:   3'- -GGAG--CGGGCUG--UGUGGCuUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 38892 0.66 0.687293
Target:  5'- gCCagGCCCGaACAgACCGAugcuCUgguagucGCGCc -3'
miRNA:   3'- -GGagCGGGC-UGUgUGGCUu---GAa------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 20542 0.66 0.709057
Target:  5'- --gCGCCCGGCAgCGCCGcgGACgucGUGUu -3'
miRNA:   3'- ggaGCGGGCUGU-GUGGC--UUGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 12406 0.67 0.598956
Target:  5'- --gCGCUCGACACcgucgaucCCGAGaucgUGCGCg -3'
miRNA:   3'- ggaGCGGGCUGUGu-------GGCUUga--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 30143 0.67 0.632136
Target:  5'- uCCggcgCGCCCGGCgcgGCGCUGucCUU-CGCg -3'
miRNA:   3'- -GGa---GCGGGCUG---UGUGGCuuGAAcGCG- -5'
28008 3' -55.1 NC_005887.1 + 7120 0.66 0.665314
Target:  5'- gCUCaucaGCCCcACGCagGCCGAcaaGCUgcUGCGCa -3'
miRNA:   3'- gGAG----CGGGcUGUG--UGGCU---UGA--ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 11352 0.66 0.709057
Target:  5'- gCCgCGCCacgcgagaGACGCAccCCGAACagUGgGCg -3'
miRNA:   3'- -GGaGCGGg-------CUGUGU--GGCUUGa-ACgCG- -5'
28008 3' -55.1 NC_005887.1 + 40625 0.67 0.632136
Target:  5'- aCCUCguugaGCCaCGcgaacgugagcuGCAUGCCGcgcAGCUUGCGCu -3'
miRNA:   3'- -GGAG-----CGG-GC------------UGUGUGGC---UUGAACGCG- -5'
28008 3' -55.1 NC_005887.1 + 41327 0.66 0.709057
Target:  5'- cCUUCGUCCGcuuCAaGCCGGugUacaGCGCg -3'
miRNA:   3'- -GGAGCGGGCu--GUgUGGCUugAa--CGCG- -5'
28008 3' -55.1 NC_005887.1 + 13819 0.66 0.665314
Target:  5'- ---aGCCCGGCGCGCgUGAGCgUGCc- -3'
miRNA:   3'- ggagCGGGCUGUGUG-GCUUGaACGcg -5'
28008 3' -55.1 NC_005887.1 + 39897 0.67 0.632136
Target:  5'- gCCUCG-UCGACgGCGCCGuAGC--GCGCg -3'
miRNA:   3'- -GGAGCgGGCUG-UGUGGC-UUGaaCGCG- -5'
28008 3' -55.1 NC_005887.1 + 12035 0.66 0.673025
Target:  5'- aUCUCGUguucgagaacgugaUCGGCcugACugCGAACgucgUGCGCg -3'
miRNA:   3'- -GGAGCG--------------GGCUG---UGugGCUUGa---ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 23906 0.66 0.687293
Target:  5'- uCUUCGCCUGcgucgagauCGCGCCGAucagcgucguGCUgacgacgGCGCc -3'
miRNA:   3'- -GGAGCGGGCu--------GUGUGGCU----------UGAa------CGCG- -5'
28008 3' -55.1 NC_005887.1 + 6423 0.66 0.687293
Target:  5'- -aUCGCCguguggccggaCGGcCGCGCCGAGaucgaagUGCGCg -3'
miRNA:   3'- ggAGCGG-----------GCU-GUGUGGCUUga-----ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 36392 0.66 0.698207
Target:  5'- -aUCGCCgGACGCGCC-AGCgaGCu- -3'
miRNA:   3'- ggAGCGGgCUGUGUGGcUUGaaCGcg -5'
28008 3' -55.1 NC_005887.1 + 684 0.68 0.585743
Target:  5'- cCUUCGUCCGGCuCGCC-AACguagacgaagcgUGCGCc -3'
miRNA:   3'- -GGAGCGGGCUGuGUGGcUUGa-----------ACGCG- -5'
28008 3' -55.1 NC_005887.1 + 37680 0.68 0.587941
Target:  5'- cCCUCGCCgucuGCGCAgCGGuC-UGCGCg -3'
miRNA:   3'- -GGAGCGGgc--UGUGUgGCUuGaACGCG- -5'
28008 3' -55.1 NC_005887.1 + 7968 0.67 0.61
Target:  5'- gCCUcgCGCCCGGC-CGCCucuGAuacGCgggGCGCu -3'
miRNA:   3'- -GGA--GCGGGCUGuGUGG---CU---UGaa-CGCG- -5'
28008 3' -55.1 NC_005887.1 + 24008 0.67 0.629921
Target:  5'- -gUCGCCCGAacgucgcauguCGCCGA---UGCGCc -3'
miRNA:   3'- ggAGCGGGCUgu---------GUGGCUugaACGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.