Results 61 - 80 of 101 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 14820 | 0.7 | 0.272371 |
Target: 5'- uGGCGGCcgcGACGcuGAUGGCGgGCACGuucGCGGg -3' miRNA: 3'- -CCGCCG---CUGC--CUGCCGC-UGUGC---UGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 6045 | 0.7 | 0.259223 |
Target: 5'- gGGUGGUGcUGGugGcaGCGGCGCGGCa- -3' miRNA: 3'- -CCGCCGCuGCCugC--CGCUGUGCUGcu -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 9276 | 0.71 | 0.24048 |
Target: 5'- -aCGGCGGuCGGcACGGCGACGCcGCa- -3' miRNA: 3'- ccGCCGCU-GCC-UGCCGCUGUGcUGcu -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 34241 | 0.71 | 0.24048 |
Target: 5'- aGCGGCGcCu--CGGCGAgCGCGGCGAg -3' miRNA: 3'- cCGCCGCuGccuGCCGCU-GUGCUGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 39358 | 0.71 | 0.24048 |
Target: 5'- aGGCGcGuUGACGGACGaagaaGCGACggACGugGAg -3' miRNA: 3'- -CCGC-C-GCUGCCUGC-----CGCUG--UGCugCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 14527 | 0.71 | 0.228622 |
Target: 5'- uGCaGGCG-CGGccguCGGCGGCGCGuCGAu -3' miRNA: 3'- cCG-CCGCuGCCu---GCCGCUGUGCuGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 18552 | 0.71 | 0.22288 |
Target: 5'- gGGCGGCGGCGc-CGGCuuCGCgGGCGAc -3' miRNA: 3'- -CCGCCGCUGCcuGCCGcuGUG-CUGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 39092 | 0.71 | 0.221747 |
Target: 5'- cGCGGCGACGaaguugcgcagcGCGaGCGGCGCGGuCGAa -3' miRNA: 3'- cCGCCGCUGCc-----------UGC-CGCUGUGCU-GCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 4529 | 0.72 | 0.211765 |
Target: 5'- cGGCGGCGuccCGGucgaGGCGAUGagcacCGACGAg -3' miRNA: 3'- -CCGCCGCu--GCCug--CCGCUGU-----GCUGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 1487 | 0.72 | 0.211765 |
Target: 5'- cGGCGuGCGGCGcuCGcGCGGCGCGGCc- -3' miRNA: 3'- -CCGC-CGCUGCcuGC-CGCUGUGCUGcu -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 37726 | 0.72 | 0.201131 |
Target: 5'- cGCGcCGGCGGccacCGGCGcCGCGGCGAg -3' miRNA: 3'- cCGCcGCUGCCu---GCCGCuGUGCUGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 18795 | 0.72 | 0.201131 |
Target: 5'- cGGcCGGCGauGCGGGCGGCGucaGCGuACGc -3' miRNA: 3'- -CC-GCCGC--UGCCUGCCGCug-UGC-UGCu -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 5404 | 0.72 | 0.190963 |
Target: 5'- cGGUGaacCGGCGGGCGGCGcCGCaGCGAc -3' miRNA: 3'- -CCGCc--GCUGCCUGCCGCuGUGcUGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 16756 | 0.73 | 0.18125 |
Target: 5'- uGCGGCagacGAUGGGCGcgauCGACGCGAUGAa -3' miRNA: 3'- cCGCCG----CUGCCUGCc---GCUGUGCUGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 2704 | 0.73 | 0.171977 |
Target: 5'- gGGCGGCaaGCGGcCGaGCcGCGCGACGAc -3' miRNA: 3'- -CCGCCGc-UGCCuGC-CGcUGUGCUGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 1931 | 0.73 | 0.167501 |
Target: 5'- gGGCGGCGucauGCGuGACGGCGAUcgGugGGu -3' miRNA: 3'- -CCGCCGC----UGC-CUGCCGCUGugCugCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 12629 | 0.73 | 0.163129 |
Target: 5'- cGCGGCG-CGuGAUccuGCGACGCGACGGc -3' miRNA: 3'- cCGCCGCuGC-CUGc--CGCUGUGCUGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 41816 | 0.73 | 0.158861 |
Target: 5'- cGGC-GCGGCGcGCGGCGGC-CGACGc -3' miRNA: 3'- -CCGcCGCUGCcUGCCGCUGuGCUGCu -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 19188 | 0.74 | 0.154694 |
Target: 5'- cGGCgcgGGCGugGaGACaGGCGGCGCGguuACGAc -3' miRNA: 3'- -CCG---CCGCugC-CUG-CCGCUGUGC---UGCU- -5' |
|||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 28332 | 0.74 | 0.150626 |
Target: 5'- cGGCGGCGcgccggcgguuGCGGA-GGCG-CGCGGCGc -3' miRNA: 3'- -CCGCCGC-----------UGCCUgCCGCuGUGCUGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home