miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 35043 1.1 0.000294
Target:  5'- cGGCGGCGACGGACGGCGACACGACGAc -3'
miRNA:   3'- -CCGCCGCUGCCUGCCGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 39441 0.8 0.05748
Target:  5'- uGGCGGCGGCGucguucGCGGCGGC-CGACGu -3'
miRNA:   3'- -CCGCCGCUGCc-----UGCCGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 23129 0.79 0.060804
Target:  5'- uGGCGGUGAgGuGACGGCGugACGAUc- -3'
miRNA:   3'- -CCGCCGCUgC-CUGCCGCugUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 34938 0.79 0.062535
Target:  5'- aGGCGGCGGCGGGugcgaccgUGGCGAUcgucguCGGCGAg -3'
miRNA:   3'- -CCGCCGCUGCCU--------GCCGCUGu-----GCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 10562 0.78 0.071728
Target:  5'- cGGCGGCaGACcacuggcucgcagGGugGGCGACucCGACGAc -3'
miRNA:   3'- -CCGCCG-CUG-------------CCugCCGCUGu-GCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 25496 0.78 0.076053
Target:  5'- cGGCGGCu-CGGACGaUGGCGCGGCGGg -3'
miRNA:   3'- -CCGCCGcuGCCUGCcGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 1590 0.77 0.086898
Target:  5'- cGGCGGCGcGCGGcgcgccaACGGCGAUcgccucgacgcggGCGGCGAc -3'
miRNA:   3'- -CCGCCGC-UGCC-------UGCCGCUG-------------UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 18916 0.77 0.089831
Target:  5'- cGGCGGgaUGGCGGGCGGCu--GCGACGAg -3'
miRNA:   3'- -CCGCC--GCUGCCUGCCGcugUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 1005 0.77 0.09493
Target:  5'- cGGCGGCGcGCGGAucguacucaacCGGCGuCACGACc- -3'
miRNA:   3'- -CCGCCGC-UGCCU-----------GCCGCuGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 23245 0.76 0.100301
Target:  5'- aGCGGCGGCGGuCGGCGcGCAaaaGGCGc -3'
miRNA:   3'- cCGCCGCUGCCuGCCGC-UGUg--CUGCu -5'
28009 5' -59.7 NC_005887.1 + 14696 0.76 0.103093
Target:  5'- gGGCucgucGCGGCGGGCGGgccgGGCGCGGCGAu -3'
miRNA:   3'- -CCGc----CGCUGCCUGCCg---CUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 13398 0.76 0.108898
Target:  5'- cGGC-GCGGCGGAcguCGGCGGCaagccgcugcugACGACGAg -3'
miRNA:   3'- -CCGcCGCUGCCU---GCCGCUG------------UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 26651 0.75 0.118183
Target:  5'- cGcCGGCGGCGGAaucaucCGGCcGCGCGGCGGu -3'
miRNA:   3'- cC-GCCGCUGCCU------GCCGcUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 25832 0.75 0.128201
Target:  5'- -uCGGCGcCGG-CGGCGACGCGAuCGGc -3'
miRNA:   3'- ccGCCGCuGCCuGCCGCUGUGCU-GCU- -5'
28009 5' -59.7 NC_005887.1 + 16869 0.75 0.128201
Target:  5'- cGCGGCG-CGGACGGCucGACAgGcaACGAg -3'
miRNA:   3'- cCGCCGCuGCCUGCCG--CUGUgC--UGCU- -5'
28009 5' -59.7 NC_005887.1 + 40789 0.75 0.131356
Target:  5'- cGGCGGuCGAgguuCGuGGCGGCGACGCgccgcucGACGAu -3'
miRNA:   3'- -CCGCC-GCU----GC-CUGCCGCUGUG-------CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 41718 0.74 0.13531
Target:  5'- aGGCGaUGACGGGCGGCGAUcCGAUc- -3'
miRNA:   3'- -CCGCcGCUGCCUGCCGCUGuGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 17911 0.74 0.138999
Target:  5'- cGGCGGCgucacagguugGACGGACGcGCuacGCACGGCGu -3'
miRNA:   3'- -CCGCCG-----------CUGCCUGC-CGc--UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 2645 0.74 0.138999
Target:  5'- aGGUGGCGGCGGGCacucGCGAUAcCGACc- -3'
miRNA:   3'- -CCGCCGCUGCCUGc---CGCUGU-GCUGcu -5'
28009 5' -59.7 NC_005887.1 + 41597 0.74 0.14278
Target:  5'- aGCGGCGGCccaGGuGCGGCGGC-CGGCGc -3'
miRNA:   3'- cCGCCGCUG---CC-UGCCGCUGuGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.