miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 9276 0.71 0.24048
Target:  5'- -aCGGCGGuCGGcACGGCGACGCcGCa- -3'
miRNA:   3'- ccGCCGCU-GCC-UGCCGCUGUGcUGcu -5'
28009 5' -59.7 NC_005887.1 + 1931 0.73 0.167501
Target:  5'- gGGCGGCGucauGCGuGACGGCGAUcgGugGGu -3'
miRNA:   3'- -CCGCCGC----UGC-CUGCCGCUGugCugCU- -5'
28009 5' -59.7 NC_005887.1 + 2704 0.73 0.171977
Target:  5'- gGGCGGCaaGCGGcCGaGCcGCGCGACGAc -3'
miRNA:   3'- -CCGCCGc-UGCCuGC-CGcUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 16756 0.73 0.18125
Target:  5'- uGCGGCagacGAUGGGCGcgauCGACGCGAUGAa -3'
miRNA:   3'- cCGCCG----CUGCCUGCc---GCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 5404 0.72 0.190963
Target:  5'- cGGUGaacCGGCGGGCGGCGcCGCaGCGAc -3'
miRNA:   3'- -CCGCc--GCUGCCUGCCGCuGUGcUGCU- -5'
28009 5' -59.7 NC_005887.1 + 1487 0.72 0.211765
Target:  5'- cGGCGuGCGGCGcuCGcGCGGCGCGGCc- -3'
miRNA:   3'- -CCGC-CGCUGCcuGC-CGCUGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 4529 0.72 0.211765
Target:  5'- cGGCGGCGuccCGGucgaGGCGAUGagcacCGACGAg -3'
miRNA:   3'- -CCGCCGCu--GCCug--CCGCUGU-----GCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 18552 0.71 0.22288
Target:  5'- gGGCGGCGGCGc-CGGCuuCGCgGGCGAc -3'
miRNA:   3'- -CCGCCGCUGCcuGCCGcuGUG-CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 14527 0.71 0.228622
Target:  5'- uGCaGGCG-CGGccguCGGCGGCGCGuCGAu -3'
miRNA:   3'- cCG-CCGCuGCCu---GCCGCUGUGCuGCU- -5'
28009 5' -59.7 NC_005887.1 + 19188 0.74 0.154694
Target:  5'- cGGCgcgGGCGugGaGACaGGCGGCGCGguuACGAc -3'
miRNA:   3'- -CCG---CCGCugC-CUG-CCGCUGUGC---UGCU- -5'
28009 5' -59.7 NC_005887.1 + 19541 0.74 0.144319
Target:  5'- aGGCGuG-GACGGACGGCGucgauuacguugcagGCACGuCGAg -3'
miRNA:   3'- -CCGC-CgCUGCCUGCCGC---------------UGUGCuGCU- -5'
28009 5' -59.7 NC_005887.1 + 41597 0.74 0.14278
Target:  5'- aGCGGCGGCccaGGuGCGGCGGC-CGGCGc -3'
miRNA:   3'- cCGCCGCUG---CC-UGCCGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 25496 0.78 0.076053
Target:  5'- cGGCGGCu-CGGACGaUGGCGCGGCGGg -3'
miRNA:   3'- -CCGCCGcuGCCUGCcGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 23245 0.76 0.100301
Target:  5'- aGCGGCGGCGGuCGGCGcGCAaaaGGCGc -3'
miRNA:   3'- cCGCCGCUGCCuGCCGC-UGUg--CUGCu -5'
28009 5' -59.7 NC_005887.1 + 14696 0.76 0.103093
Target:  5'- gGGCucgucGCGGCGGGCGGgccgGGCGCGGCGAu -3'
miRNA:   3'- -CCGc----CGCUGCCUGCCg---CUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 13398 0.76 0.108898
Target:  5'- cGGC-GCGGCGGAcguCGGCGGCaagccgcugcugACGACGAg -3'
miRNA:   3'- -CCGcCGCUGCCU---GCCGCUG------------UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 16869 0.75 0.128201
Target:  5'- cGCGGCG-CGGACGGCucGACAgGcaACGAg -3'
miRNA:   3'- cCGCCGCuGCCUGCCG--CUGUgC--UGCU- -5'
28009 5' -59.7 NC_005887.1 + 40789 0.75 0.131356
Target:  5'- cGGCGGuCGAgguuCGuGGCGGCGACGCgccgcucGACGAu -3'
miRNA:   3'- -CCGCC-GCU----GC-CUGCCGCUGUG-------CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 41718 0.74 0.13531
Target:  5'- aGGCGaUGACGGGCGGCGAUcCGAUc- -3'
miRNA:   3'- -CCGCcGCUGCCUGCCGCUGuGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 17911 0.74 0.138999
Target:  5'- cGGCGGCgucacagguugGACGGACGcGCuacGCACGGCGu -3'
miRNA:   3'- -CCGCCG-----------CUGCCUGC-CGc--UGUGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.