miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 27356 0.67 0.396835
Target:  5'- gGGCGGCacgccuGCGGccugcGCGGCcuGCGCGGCGu -3'
miRNA:   3'- -CCGCCGc-----UGCC-----UGCCGc-UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 21230 0.66 0.478246
Target:  5'- cGUGGCGuuGGcgagcaccguguuuGCGGCGAcCGCGcCGAu -3'
miRNA:   3'- cCGCCGCugCC--------------UGCCGCU-GUGCuGCU- -5'
28009 5' -59.7 NC_005887.1 + 39399 0.66 0.471384
Target:  5'- cGGCGaG-GAUGGucGCGGCGGugcCGCGGCGc -3'
miRNA:   3'- -CCGC-CgCUGCC--UGCCGCU---GUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 25274 0.67 0.433178
Target:  5'- uGCGaGCGGuCGaGCaGCGGCAUGACGGc -3'
miRNA:   3'- cCGC-CGCU-GCcUGcCGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 26401 0.67 0.433178
Target:  5'- aGCGGCGuGCGG-CGcGUGGC-CGGCGc -3'
miRNA:   3'- cCGCCGC-UGCCuGC-CGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 27405 0.66 0.471384
Target:  5'- uGCGGCGcguCGuACGGCagcGCGCGGCGu -3'
miRNA:   3'- cCGCCGCu--GCcUGCCGc--UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 38635 0.66 0.442562
Target:  5'- cGCGGaucGCGGuCGGCG-CGCGGCu- -3'
miRNA:   3'- cCGCCgc-UGCCuGCCGCuGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 15096 0.66 0.442562
Target:  5'- -uUGGCGacGCGGGcCGGCG-CGCGAUGc -3'
miRNA:   3'- ccGCCGC--UGCCU-GCCGCuGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 13953 0.67 0.405736
Target:  5'- cGGCuGCGACGuGC-GCGugACGACa- -3'
miRNA:   3'- -CCGcCGCUGCcUGcCGCugUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 4247 0.67 0.38806
Target:  5'- uGCucGCGAUGGAgcaCGGCaaGCGCGACGAg -3'
miRNA:   3'- cCGc-CGCUGCCU---GCCGc-UGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 35043 1.1 0.000294
Target:  5'- cGGCGGCGACGGACGGCGACACGACGAc -3'
miRNA:   3'- -CCGCCGCUGCCUGCCGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 26352 0.66 0.45206
Target:  5'- cGGCucGCGGCGGgucuGCGcGCG-CACGACa- -3'
miRNA:   3'- -CCGc-CGCUGCC----UGC-CGCuGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 11007 0.66 0.461669
Target:  5'- cGUGGgccaucgaCGACGGccCGGuCGGCACGugGGa -3'
miRNA:   3'- cCGCC--------GCUGCCu-GCC-GCUGUGCugCU- -5'
28009 5' -59.7 NC_005887.1 + 29770 0.67 0.421153
Target:  5'- cGGCcgGGuCGGCGGAcaccaugcgcaugcCGGCGGCcguCGACGc -3'
miRNA:   3'- -CCG--CC-GCUGCCU--------------GCCGCUGu--GCUGCu -5'
28009 5' -59.7 NC_005887.1 + 17668 0.67 0.414762
Target:  5'- aGGCGGuCGA-GGAUGccggccGCGGCugGACa- -3'
miRNA:   3'- -CCGCC-GCUgCCUGC------CGCUGugCUGcu -5'
28009 5' -59.7 NC_005887.1 + 9208 0.66 0.442562
Target:  5'- cGCGGC-ACGGuCGGCugcuucuaccGACgcaACGGCGAg -3'
miRNA:   3'- cCGCCGcUGCCuGCCG----------CUG---UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 11932 0.67 0.396835
Target:  5'- cGuCGGCcuGAUGGugGGCGAacuCGGCGu -3'
miRNA:   3'- cC-GCCG--CUGCCugCCGCUgu-GCUGCu -5'
28009 5' -59.7 NC_005887.1 + 2168 0.68 0.382857
Target:  5'- cGGCGGCGAuucccuucgugccguCGcGcagcucacacGCGGCGAgCGCGGCGc -3'
miRNA:   3'- -CCGCCGCU---------------GC-C----------UGCCGCU-GUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 15502 0.66 0.442562
Target:  5'- cGGCGGCaACGGcuacCGGCaGACGCGcCc- -3'
miRNA:   3'- -CCGCCGcUGCCu---GCCG-CUGUGCuGcu -5'
28009 5' -59.7 NC_005887.1 + 16056 0.67 0.42391
Target:  5'- cGGCGGCaacauccuuGCGGucuuCGGCcACugGugGAa -3'
miRNA:   3'- -CCGCCGc--------UGCCu---GCCGcUGugCugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.