miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 14659 0.68 0.354261
Target:  5'- cGCGGCGA-GGuACGGCacguGAUGCaGACGAu -3'
miRNA:   3'- cCGCCGCUgCC-UGCCG----CUGUG-CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 2168 0.68 0.382857
Target:  5'- cGGCGGCGAuucccuucgugccguCGcGcagcucacacGCGGCGAgCGCGGCGc -3'
miRNA:   3'- -CCGCCGCU---------------GC-C----------UGCCGCU-GUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 26401 0.67 0.433178
Target:  5'- aGCGGCGuGCGG-CGcGUGGC-CGGCGc -3'
miRNA:   3'- cCGCCGC-UGCCuGC-CGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 11007 0.66 0.461669
Target:  5'- cGUGGgccaucgaCGACGGccCGGuCGGCACGugGGa -3'
miRNA:   3'- cCGCC--------GCUGCCu-GCC-GCUGUGCugCU- -5'
28009 5' -59.7 NC_005887.1 + 12629 0.73 0.163129
Target:  5'- cGCGGCG-CGuGAUccuGCGACGCGACGGc -3'
miRNA:   3'- cCGCCGCuGC-CUGc--CGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 1986 0.69 0.293088
Target:  5'- cGCGcGCGACGGcggcACGGCcGCGCucGACGGc -3'
miRNA:   3'- cCGC-CGCUGCC----UGCCGcUGUG--CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 11932 0.67 0.396835
Target:  5'- cGuCGGCcuGAUGGugGGCGAacuCGGCGu -3'
miRNA:   3'- cC-GCCG--CUGCCugCCGCUgu-GCUGCu -5'
28009 5' -59.7 NC_005887.1 + 27405 0.66 0.471384
Target:  5'- uGCGGCGcguCGuACGGCagcGCGCGGCGu -3'
miRNA:   3'- cCGCCGCu--GCcUGCCGc--UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 21037 0.69 0.299538
Target:  5'- cGGuCGGCG-CGGugGGCGugcccgugaauguGgGCGACGc -3'
miRNA:   3'- -CC-GCCGCuGCCugCCGC-------------UgUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 39399 0.66 0.471384
Target:  5'- cGGCGaG-GAUGGucGCGGCGGugcCGCGGCGc -3'
miRNA:   3'- -CCGC-CgCUGCC--UGCCGCU---GUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 4247 0.67 0.38806
Target:  5'- uGCucGCGAUGGAgcaCGGCaaGCGCGACGAg -3'
miRNA:   3'- cCGc-CGCUGCCU---GCCGc-UGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 5014 0.68 0.346143
Target:  5'- uGCGGCGACcGAugccagugcCGGCGcuGCuGCGACGAc -3'
miRNA:   3'- cCGCCGCUGcCU---------GCCGC--UG-UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 13953 0.67 0.405736
Target:  5'- cGGCuGCGACGuGC-GCGugACGACa- -3'
miRNA:   3'- -CCGcCGCUGCcUGcCGCugUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 16056 0.67 0.42391
Target:  5'- cGGCGGCaacauccuuGCGGucuuCGGCcACugGugGAa -3'
miRNA:   3'- -CCGCCGc--------UGCCu---GCCGcUGugCugCU- -5'
28009 5' -59.7 NC_005887.1 + 15502 0.66 0.442562
Target:  5'- cGGCGGCaACGGcuacCGGCaGACGCGcCc- -3'
miRNA:   3'- -CCGCCGcUGCCu---GCCG-CUGUGCuGcu -5'
28009 5' -59.7 NC_005887.1 + 26352 0.66 0.45206
Target:  5'- cGGCucGCGGCGGgucuGCGcGCG-CACGACa- -3'
miRNA:   3'- -CCGc-CGCUGCC----UGC-CGCuGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 25832 0.75 0.128201
Target:  5'- -uCGGCGcCGG-CGGCGACGCGAuCGGc -3'
miRNA:   3'- ccGCCGCuGCCuGCCGCUGUGCU-GCU- -5'
28009 5' -59.7 NC_005887.1 + 41816 0.73 0.158861
Target:  5'- cGGC-GCGGCGcGCGGCGGC-CGACGc -3'
miRNA:   3'- -CCGcCGCUGCcUGCCGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 39092 0.71 0.221747
Target:  5'- cGCGGCGACGaaguugcgcagcGCGaGCGGCGCGGuCGAa -3'
miRNA:   3'- cCGCCGCUGCc-----------UGC-CGCUGUGCU-GCU- -5'
28009 5' -59.7 NC_005887.1 + 8385 0.7 0.286048
Target:  5'- cGGUGcUGACGGACGcCGcACGCGACGu -3'
miRNA:   3'- -CCGCcGCUGCCUGCcGC-UGUGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.