miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 1005 0.77 0.09493
Target:  5'- cGGCGGCGcGCGGAucguacucaacCGGCGuCACGACc- -3'
miRNA:   3'- -CCGCCGC-UGCCU-----------GCCGCuGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 1487 0.72 0.211765
Target:  5'- cGGCGuGCGGCGcuCGcGCGGCGCGGCc- -3'
miRNA:   3'- -CCGC-CGCUGCcuGC-CGCUGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 1590 0.77 0.086898
Target:  5'- cGGCGGCGcGCGGcgcgccaACGGCGAUcgccucgacgcggGCGGCGAc -3'
miRNA:   3'- -CCGCCGC-UGCC-------UGCCGCUG-------------UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 1931 0.73 0.167501
Target:  5'- gGGCGGCGucauGCGuGACGGCGAUcgGugGGu -3'
miRNA:   3'- -CCGCCGC----UGC-CUGCCGCUGugCugCU- -5'
28009 5' -59.7 NC_005887.1 + 1986 0.69 0.293088
Target:  5'- cGCGcGCGACGGcggcACGGCcGCGCucGACGGc -3'
miRNA:   3'- cCGC-CGCUGCC----UGCCGcUGUG--CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 2168 0.68 0.382857
Target:  5'- cGGCGGCGAuucccuucgugccguCGcGcagcucacacGCGGCGAgCGCGGCGc -3'
miRNA:   3'- -CCGCCGCU---------------GC-C----------UGCCGCU-GUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 2645 0.74 0.138999
Target:  5'- aGGUGGCGGCGGGCacucGCGAUAcCGACc- -3'
miRNA:   3'- -CCGCCGCUGCCUGc---CGCUGU-GCUGcu -5'
28009 5' -59.7 NC_005887.1 + 2704 0.73 0.171977
Target:  5'- gGGCGGCaaGCGGcCGaGCcGCGCGACGAc -3'
miRNA:   3'- -CCGCCGc-UGCCuGC-CGcUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 2890 0.67 0.414762
Target:  5'- aGGCGaCGACGGAcacguCGGCcGcCGCGaACGAc -3'
miRNA:   3'- -CCGCcGCUGCCU-----GCCG-CuGUGC-UGCU- -5'
28009 5' -59.7 NC_005887.1 + 3905 0.7 0.272371
Target:  5'- cGGauGUG-CGGAUGGCGAacgaCAUGGCGAa -3'
miRNA:   3'- -CCgcCGCuGCCUGCCGCU----GUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 4247 0.67 0.38806
Target:  5'- uGCucGCGAUGGAgcaCGGCaaGCGCGACGAg -3'
miRNA:   3'- cCGc-CGCUGCCU---GCCGc-UGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 4529 0.72 0.211765
Target:  5'- cGGCGGCGuccCGGucgaGGCGAUGagcacCGACGAg -3'
miRNA:   3'- -CCGCCGCu--GCCug--CCGCUGU-----GCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 4625 0.68 0.362513
Target:  5'- cGCGGCGcCGGugGccgcCGGCGCGAUc- -3'
miRNA:   3'- cCGCCGCuGCCugCc---GCUGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 5014 0.68 0.346143
Target:  5'- uGCGGCGACcGAugccagugcCGGCGcuGCuGCGACGAc -3'
miRNA:   3'- cCGCCGCUGcCU---------GCCGC--UG-UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 5404 0.72 0.190963
Target:  5'- cGGUGaacCGGCGGGCGGCGcCGCaGCGAc -3'
miRNA:   3'- -CCGCc--GCUGCCUGCCGCuGUGcUGCU- -5'
28009 5' -59.7 NC_005887.1 + 5623 0.69 0.322594
Target:  5'- uGCgGGCGACGcGGugaaGGCGAUACG-CGAg -3'
miRNA:   3'- cCG-CCGCUGC-CUg---CCGCUGUGCuGCU- -5'
28009 5' -59.7 NC_005887.1 + 5814 0.69 0.322594
Target:  5'- cGGCGGCGAuCGaGuCGGCGcggguCGCGaaggGCGAa -3'
miRNA:   3'- -CCGCCGCU-GC-CuGCCGCu----GUGC----UGCU- -5'
28009 5' -59.7 NC_005887.1 + 6045 0.7 0.259223
Target:  5'- gGGUGGUGcUGGugGcaGCGGCGCGGCa- -3'
miRNA:   3'- -CCGCCGCuGCCugC--CGCUGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 6167 0.69 0.329531
Target:  5'- cGGCacGGUGAucccgguCGGcACGGUGACGCGccGCGAc -3'
miRNA:   3'- -CCG--CCGCU-------GCC-UGCCGCUGUGC--UGCU- -5'
28009 5' -59.7 NC_005887.1 + 7574 0.66 0.45206
Target:  5'- uGGCaGGCGuaucCGGACGGCauCGCGuaaGCGGc -3'
miRNA:   3'- -CCG-CCGCu---GCCUGCCGcuGUGC---UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.