miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28010 5' -53.3 NC_005887.1 + 33516 0.66 0.785212
Target:  5'- gCGCgaucUUGUCGgCGAUCacCGUgAGCGc -3'
miRNA:   3'- aGCG----AACAGCgGCUAGaaGCAgUCGC- -5'
28010 5' -53.3 NC_005887.1 + 15582 0.66 0.785212
Target:  5'- uUCGCUgaUCGCCGAagCUgagaCG-CAGCGc -3'
miRNA:   3'- -AGCGAacAGCGGCUa-GAa---GCaGUCGC- -5'
28010 5' -53.3 NC_005887.1 + 24019 0.66 0.774978
Target:  5'- gUCGCaUGUCGCCGAUg--CGccccCAGUGc -3'
miRNA:   3'- -AGCGaACAGCGGCUAgaaGCa---GUCGC- -5'
28010 5' -53.3 NC_005887.1 + 36384 0.66 0.774978
Target:  5'- gUCGCUgcaUCGCCGGacg-CGcCAGCGa -3'
miRNA:   3'- -AGCGAac-AGCGGCUagaaGCaGUCGC- -5'
28010 5' -53.3 NC_005887.1 + 36294 0.66 0.764588
Target:  5'- cUCGUccgGUUgGCCGAUCUgCG-CGGCGg -3'
miRNA:   3'- -AGCGaa-CAG-CGGCUAGAaGCaGUCGC- -5'
28010 5' -53.3 NC_005887.1 + 24226 0.66 0.743389
Target:  5'- gCGCU--UCGCCGGUUg-CGUaCAGCGc -3'
miRNA:   3'- aGCGAacAGCGGCUAGaaGCA-GUCGC- -5'
28010 5' -53.3 NC_005887.1 + 13665 0.66 0.743389
Target:  5'- uUCGCgggcgUGaUCGCgGGUUgUCGUCuGGCGa -3'
miRNA:   3'- -AGCGa----AC-AGCGgCUAGaAGCAG-UCGC- -5'
28010 5' -53.3 NC_005887.1 + 14076 0.66 0.743389
Target:  5'- gCGCUcGgcgUGCCGAUgaugcUCGUCAGUGg -3'
miRNA:   3'- aGCGAaCa--GCGGCUAga---AGCAGUCGC- -5'
28010 5' -53.3 NC_005887.1 + 32657 0.66 0.732606
Target:  5'- aUCGCUgaGUCaUCGGUCUgcUgGUCGGCGu -3'
miRNA:   3'- -AGCGAa-CAGcGGCUAGA--AgCAGUCGC- -5'
28010 5' -53.3 NC_005887.1 + 34064 0.66 0.732606
Target:  5'- gCGUgUGUCaGCCGuuuuUCUUCGUCAcCGu -3'
miRNA:   3'- aGCGaACAG-CGGCu---AGAAGCAGUcGC- -5'
28010 5' -53.3 NC_005887.1 + 19621 0.67 0.710733
Target:  5'- uUCGCgagcagUGUccCGCCGAUC-UCGcucaCGGCGa -3'
miRNA:   3'- -AGCGa-----ACA--GCGGCUAGaAGCa---GUCGC- -5'
28010 5' -53.3 NC_005887.1 + 33886 0.67 0.710733
Target:  5'- gCGCUccGUCGCCGuAUUggUCGUCGuGCu -3'
miRNA:   3'- aGCGAa-CAGCGGC-UAGa-AGCAGU-CGc -5'
28010 5' -53.3 NC_005887.1 + 28465 0.67 0.699668
Target:  5'- -gGCUUGUUGCCGggCcgCuUCAGCu -3'
miRNA:   3'- agCGAACAGCGGCuaGaaGcAGUCGc -5'
28010 5' -53.3 NC_005887.1 + 22845 0.67 0.688534
Target:  5'- gUCGCcUG-CGCCGAUgcUCGcCGGCa -3'
miRNA:   3'- -AGCGaACaGCGGCUAgaAGCaGUCGc -5'
28010 5' -53.3 NC_005887.1 + 27970 0.68 0.628849
Target:  5'- aUCGCUcuUGcCGCCGccggcucgggccgaAUCgcgUCGUCGGCc -3'
miRNA:   3'- -AGCGA--ACaGCGGC--------------UAGa--AGCAGUCGc -5'
28010 5' -53.3 NC_005887.1 + 34983 0.69 0.609644
Target:  5'- aCGCggcgUUGUCGUCGGUCUg---CAGCGc -3'
miRNA:   3'- aGCG----AACAGCGGCUAGAagcaGUCGC- -5'
28010 5' -53.3 NC_005887.1 + 38629 0.69 0.609644
Target:  5'- -aGCUUG-CGCgGAUCgcgGUCGGCGc -3'
miRNA:   3'- agCGAACaGCGgCUAGaagCAGUCGC- -5'
28010 5' -53.3 NC_005887.1 + 32991 0.69 0.598372
Target:  5'- uUCGUcUGUCGCCGAU--UCGUCcuGCc -3'
miRNA:   3'- -AGCGaACAGCGGCUAgaAGCAGu-CGc -5'
28010 5' -53.3 NC_005887.1 + 39872 0.69 0.58713
Target:  5'- cUCGCc-GUCGauGAUCcgCGUCAGCGc -3'
miRNA:   3'- -AGCGaaCAGCggCUAGaaGCAGUCGC- -5'
28010 5' -53.3 NC_005887.1 + 8404 0.69 0.564774
Target:  5'- aCGCgacgUGcUCGCCGAgCgcCGUCGGCa -3'
miRNA:   3'- aGCGa---AC-AGCGGCUaGaaGCAGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.