Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28013 | 5' | -62.1 | NC_005887.1 | + | 24206 | 0.68 | 0.227226 |
Target: 5'- cGgcACGaCGUCGGcgGCCCGCGCUucgccGGUu -3' miRNA: 3'- -CauUGCcGCGGCCa-CGGGCGCGA-----CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 24382 | 0.69 | 0.194539 |
Target: 5'- --uGCGGCcgauGCCGGcgaGCCCGCGCaucaUGuGCg -3' miRNA: 3'- cauUGCCG----CGGCCa--CGGGCGCG----AC-CG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 24879 | 0.73 | 0.091091 |
Target: 5'- -aGGCGGCgGCCGaUGCCgCGCGCUcGGUc -3' miRNA: 3'- caUUGCCG-CGGCcACGG-GCGCGA-CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 25832 | 0.66 | 0.306457 |
Target: 5'- ---uCGGCGCCGGcgGCgaCGCGaucGGCc -3' miRNA: 3'- cauuGCCGCGGCCa-CGg-GCGCga-CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 26060 | 0.67 | 0.24463 |
Target: 5'- aUggUGGUGCUccuGGUcagcgcgucagcgGCCCGCGC-GGCg -3' miRNA: 3'- cAuuGCCGCGG---CCA-------------CGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 26101 | 0.74 | 0.077031 |
Target: 5'- ---uCGGCGaCGGUGCCCGUGCgcucgccGGCc -3' miRNA: 3'- cauuGCCGCgGCCACGGGCGCGa------CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 26208 | 0.77 | 0.046284 |
Target: 5'- -gGGCGGCGgUGGccgGCCUGCaGCUGGCg -3' miRNA: 3'- caUUGCCGCgGCCa--CGGGCG-CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 26325 | 0.66 | 0.291909 |
Target: 5'- ----aGGUucagGCCGuG-GCCgGCGCUGGCc -3' miRNA: 3'- cauugCCG----CGGC-CaCGGgCGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 27356 | 0.67 | 0.257914 |
Target: 5'- -gGGCGGCacGCCuGcgGCCUGCGC-GGCc -3' miRNA: 3'- caUUGCCG--CGGcCa-CGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 27702 | 0.68 | 0.233106 |
Target: 5'- ---cCGGCGaCGGgcaGCaCCGCGCcGGCu -3' miRNA: 3'- cauuGCCGCgGCCa--CG-GGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 27747 | 0.66 | 0.299114 |
Target: 5'- -aGACGGaagugGCCGaUGCCgagCGCGCcGGCg -3' miRNA: 3'- caUUGCCg----CGGCcACGG---GCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 28043 | 0.66 | 0.306457 |
Target: 5'- ---uCGGCGUCG--GCCUGCGCUuGCg -3' miRNA: 3'- cauuGCCGCGGCcaCGGGCGCGAcCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 28332 | 0.67 | 0.257914 |
Target: 5'- -cGGCGGCgcGCCGGcGgUUGCGgaGGCg -3' miRNA: 3'- caUUGCCG--CGGCCaCgGGCGCgaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 28733 | 0.66 | 0.306457 |
Target: 5'- --uGCGGcCGCCGc-GCgCCGCGCUGccaGCa -3' miRNA: 3'- cauUGCC-GCGGCcaCG-GGCGCGAC---CG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 28836 | 0.68 | 0.239114 |
Target: 5'- cGUGGC-GCGCa--UGCCCGUGCcGGCg -3' miRNA: 3'- -CAUUGcCGCGgccACGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 29941 | 0.7 | 0.166042 |
Target: 5'- --cGCGGUGUCGuUGCCC-UGCUGGUa -3' miRNA: 3'- cauUGCCGCGGCcACGGGcGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 30225 | 0.66 | 0.284839 |
Target: 5'- -cGACGGCgGCC--UGCUCGUcCUGGCg -3' miRNA: 3'- caUUGCCG-CGGccACGGGCGcGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 30921 | 0.67 | 0.264444 |
Target: 5'- --cGCGGCaucGCCuuGUGCCagCGCGCUcGGCg -3' miRNA: 3'- cauUGCCG---CGGc-CACGG--GCGCGA-CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 30954 | 0.79 | 0.031901 |
Target: 5'- uUGGCGGCGCCGGccGCCaGCGCUccGGCu -3' miRNA: 3'- cAUUGCCGCGGCCa-CGGgCGCGA--CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 32073 | 0.67 | 0.257914 |
Target: 5'- -cGACGuaGCGCaCGGUcuGCCCGUugacCUGGCg -3' miRNA: 3'- caUUGC--CGCG-GCCA--CGGGCGc---GACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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