Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28013 | 5' | -62.1 | NC_005887.1 | + | 6477 | 0.67 | 0.277906 |
Target: 5'- gGgcGCGGCGUcgCGGUGUCUGCcgagcgcaauccGCaGGCg -3' miRNA: 3'- -CauUGCCGCG--GCCACGGGCG------------CGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 41361 | 0.67 | 0.277906 |
Target: 5'- --cACGGCgGCCGGcaauuUGCgCGUGUcGGCg -3' miRNA: 3'- cauUGCCG-CGGCC-----ACGgGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 39979 | 0.67 | 0.271108 |
Target: 5'- -gAACGGCGUgucuucgucguCGGccUGCgaGCGCUGGUc -3' miRNA: 3'- caUUGCCGCG-----------GCC--ACGggCGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 36057 | 0.67 | 0.271108 |
Target: 5'- gGUGugGGCaGaCCGGUGCgaaccgaCGUGCggUGGCc -3' miRNA: 3'- -CAUugCCG-C-GGCCACGg------GCGCG--ACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 37305 | 0.67 | 0.264444 |
Target: 5'- cGgcGCGGCcauuGCC-GUGCCUuCGUUGGCu -3' miRNA: 3'- -CauUGCCG----CGGcCACGGGcGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 34240 | 0.67 | 0.264444 |
Target: 5'- -cAGCGGCGCCucgGCgaGCGC-GGCg -3' miRNA: 3'- caUUGCCGCGGccaCGggCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 32073 | 0.67 | 0.257914 |
Target: 5'- -cGACGuaGCGCaCGGUcuGCCCGUugacCUGGCg -3' miRNA: 3'- caUUGC--CGCG-GCCA--CGGGCGc---GACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 28332 | 0.67 | 0.257914 |
Target: 5'- -cGGCGGCgcGCCGGcGgUUGCGgaGGCg -3' miRNA: 3'- caUUGCCG--CGGCCaCgGGCGCgaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 15870 | 0.66 | 0.291908 |
Target: 5'- -aAGCG--GCCGGcaUGCCCGUGCUcguGGCc -3' miRNA: 3'- caUUGCcgCGGCC--ACGGGCGCGA---CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 6328 | 0.66 | 0.299114 |
Target: 5'- ---cCGGCGCCgaGGUGa-CGCuGCUGGUu -3' miRNA: 3'- cauuGCCGCGG--CCACggGCG-CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 13933 | 0.66 | 0.329308 |
Target: 5'- --cACGaGCGCC--UGCgCGCGCUcGGCu -3' miRNA: 3'- cauUGC-CGCGGccACGgGCGCGA-CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 18399 | 0.66 | 0.329308 |
Target: 5'- ----aGGuCGUCGGUGCgUGCGCagacGGCc -3' miRNA: 3'- cauugCC-GCGGCCACGgGCGCGa---CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 9130 | 0.66 | 0.321553 |
Target: 5'- --cACGGCGCgacCGaGUGCCaGUGC-GGCg -3' miRNA: 3'- cauUGCCGCG---GC-CACGGgCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 37721 | 0.66 | 0.306457 |
Target: 5'- uUGAUcGCGCCGGcgGCCaccgGCGCcgcGGCg -3' miRNA: 3'- cAUUGcCGCGGCCa-CGGg---CGCGa--CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 28733 | 0.66 | 0.306457 |
Target: 5'- --uGCGGcCGCCGc-GCgCCGCGCUGccaGCa -3' miRNA: 3'- cauUGCC-GCGGCcaCG-GGCGCGAC---CG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 28043 | 0.66 | 0.306457 |
Target: 5'- ---uCGGCGUCG--GCCUGCGCUuGCg -3' miRNA: 3'- cauuGCCGCGGCcaCGGGCGCGAcCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 25832 | 0.66 | 0.306457 |
Target: 5'- ---uCGGCGCCGGcgGCgaCGCGaucGGCc -3' miRNA: 3'- cauuGCCGCGGCCa-CGg-GCGCga-CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 17804 | 0.66 | 0.306457 |
Target: 5'- -cAugGGCGCCcggccgaaGGUGCggCCGCGCgugauGCu -3' miRNA: 3'- caUugCCGCGG--------CCACG--GGCGCGac---CG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 9600 | 0.66 | 0.299114 |
Target: 5'- aUGGCGcGCGCCGGcGCgcacgcgagcgCCGCGCUaccccgccgugGGUg -3' miRNA: 3'- cAUUGC-CGCGGCCaCG-----------GGCGCGA-----------CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 1421 | 0.66 | 0.299114 |
Target: 5'- ---uCGGCGUugccgaacuCGGUGCgCGCGC-GGUa -3' miRNA: 3'- cauuGCCGCG---------GCCACGgGCGCGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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