miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 26208 0.77 0.046284
Target:  5'- -gGGCGGCGgUGGccgGCCUGCaGCUGGCg -3'
miRNA:   3'- caUUGCCGCgGCCa--CGGGCG-CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 14506 0.66 0.321553
Target:  5'- --cGCGGUGCuUGGUgGUCCGCuuGCaGGCg -3'
miRNA:   3'- cauUGCCGCG-GCCA-CGGGCG--CGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 13372 0.66 0.313936
Target:  5'- ---cCGGCGauGGcGCUCGCGCUgaaGGCc -3'
miRNA:   3'- cauuGCCGCggCCaCGGGCGCGA---CCG- -5'
28013 5' -62.1 NC_005887.1 + 840 0.66 0.313936
Target:  5'- --cGCGGCcgcgaagaaaGCCaaGGUGCCCGUggacGCgUGGCc -3'
miRNA:   3'- cauUGCCG----------CGG--CCACGGGCG----CG-ACCG- -5'
28013 5' -62.1 NC_005887.1 + 41611 0.66 0.313936
Target:  5'- --uGCGGCgGCCGGcgcgGCCCGUgaggaucuGCUGcGUc -3'
miRNA:   3'- cauUGCCG-CGGCCa---CGGGCG--------CGAC-CG- -5'
28013 5' -62.1 NC_005887.1 + 41951 0.66 0.305716
Target:  5'- ---cCGGCGUgcucgcgUGGUGCgUGCGC-GGCg -3'
miRNA:   3'- cauuGCCGCG-------GCCACGgGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 41851 0.66 0.299114
Target:  5'- cUGGCGGCGCCuGaUGCUCGUGCcguucGaGCg -3'
miRNA:   3'- cAUUGCCGCGGcC-ACGGGCGCGa----C-CG- -5'
28013 5' -62.1 NC_005887.1 + 27747 0.66 0.299114
Target:  5'- -aGACGGaagugGCCGaUGCCgagCGCGCcGGCg -3'
miRNA:   3'- caUUGCCg----CGGCcACGG---GCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 26325 0.66 0.291909
Target:  5'- ----aGGUucagGCCGuG-GCCgGCGCUGGCc -3'
miRNA:   3'- cauugCCG----CGGC-CaCGGgCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 4893 0.66 0.284839
Target:  5'- -cGAUGGuCGCCGaGgGCCgGCGCgaGGUg -3'
miRNA:   3'- caUUGCC-GCGGC-CaCGGgCGCGa-CCG- -5'
28013 5' -62.1 NC_005887.1 + 12564 0.67 0.280663
Target:  5'- -cGACGGcCGCCGGcaugcgcauggUGUCCGCcgacccggccgcgacGCUcGGCg -3'
miRNA:   3'- caUUGCC-GCGGCC-----------ACGGGCG---------------CGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 32738 0.67 0.264444
Target:  5'- gGUAgcGCGGCGCUcGcGUgCGCGCcGGCg -3'
miRNA:   3'- -CAU--UGCCGCGGcCaCGgGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 1944 0.67 0.264444
Target:  5'- cGUGACGGCGaUCGGUGggucgugaaCCCG-GC-GGCc -3'
miRNA:   3'- -CAUUGCCGC-GGCCAC---------GGGCgCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 30921 0.67 0.264444
Target:  5'- --cGCGGCaucGCCuuGUGCCagCGCGCUcGGCg -3'
miRNA:   3'- cauUGCCG---CGGc-CACGG--GCGCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 10999 0.67 0.257914
Target:  5'- -gGAUGGCG-UGGUGCUCGgGUgcGGCg -3'
miRNA:   3'- caUUGCCGCgGCCACGGGCgCGa-CCG- -5'
28013 5' -62.1 NC_005887.1 + 5416 0.67 0.257914
Target:  5'- -gGGCGGCGCCGcagcgaccgGCgcgaccacgCCGCccGCUGGCa -3'
miRNA:   3'- caUUGCCGCGGCca-------CG---------GGCG--CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 26060 0.67 0.24463
Target:  5'- aUggUGGUGCUccuGGUcagcgcgucagcgGCCCGCGC-GGCg -3'
miRNA:   3'- cAuuGCCGCGG---CCA-------------CGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 24206 0.68 0.227226
Target:  5'- cGgcACGaCGUCGGcgGCCCGCGCUucgccGGUu -3'
miRNA:   3'- -CauUGCcGCGGCCa-CGGGCGCGA-----CCG- -5'
28013 5' -62.1 NC_005887.1 + 41484 0.68 0.210336
Target:  5'- -cGGCGGCG-CGG-GCCaCGCGUccacgGGCa -3'
miRNA:   3'- caUUGCCGCgGCCaCGG-GCGCGa----CCG- -5'
28013 5' -62.1 NC_005887.1 + 20799 0.69 0.207091
Target:  5'- cGUAAUuGCGCCGGUcGCCUGCaGCgucgugaauuucccGGCa -3'
miRNA:   3'- -CAUUGcCGCGGCCA-CGGGCG-CGa-------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.