miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 26060 0.67 0.24463
Target:  5'- aUggUGGUGCUccuGGUcagcgcgucagcgGCCCGCGC-GGCg -3'
miRNA:   3'- cAuuGCCGCGG---CCA-------------CGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 14641 0.7 0.175099
Target:  5'- --cACGGCaGCCGGcgcggugcUGCCCGuCGCcGGUu -3'
miRNA:   3'- cauUGCCG-CGGCC--------ACGGGC-GCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 39530 0.69 0.189509
Target:  5'- -cAACuGGCGCCGGcucUGUaccccaauCCGCGCgacgGGCu -3'
miRNA:   3'- caUUG-CCGCGGCC---ACG--------GGCGCGa---CCG- -5'
28013 5' -62.1 NC_005887.1 + 23278 0.69 0.194539
Target:  5'- cGUGGCGGuUGCCGcaGCCCGCGCcGa- -3'
miRNA:   3'- -CAUUGCC-GCGGCcaCGGGCGCGaCcg -5'
28013 5' -62.1 NC_005887.1 + 37447 0.69 0.194539
Target:  5'- --cGCGGCGCU--UGCCUGCGC-GGUu -3'
miRNA:   3'- cauUGCCGCGGccACGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 11098 0.68 0.210336
Target:  5'- cGUGGCGcaucgGCUGGUGCgCGCgaaGCUGGCc -3'
miRNA:   3'- -CAUUGCcg---CGGCCACGgGCG---CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 10208 0.68 0.233106
Target:  5'- --uGCGucGCGUCGaUGCCCGCGCcggacGGCg -3'
miRNA:   3'- cauUGC--CGCGGCcACGGGCGCGa----CCG- -5'
28013 5' -62.1 NC_005887.1 + 14710 0.68 0.233106
Target:  5'- -gGGCGG-GCCGGgcgcgGCgaUCGCGCaGGCg -3'
miRNA:   3'- caUUGCCgCGGCCa----CG--GGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 21273 0.68 0.233106
Target:  5'- --cGCGGCGgCGGcGUaugCGCuGCUGGCg -3'
miRNA:   3'- cauUGCCGCgGCCaCGg--GCG-CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 41269 0.7 0.166042
Target:  5'- -cAAUGGCGCCGucGaCCUGCGCacgGGCg -3'
miRNA:   3'- caUUGCCGCGGCcaC-GGGCGCGa--CCG- -5'
28013 5' -62.1 NC_005887.1 + 15844 0.7 0.161672
Target:  5'- --cGCGGCGCgaucgaGGgaaacGCCCGCGCgcagcaGGCg -3'
miRNA:   3'- cauUGCCGCGg-----CCa----CGGGCGCGa-----CCG- -5'
28013 5' -62.1 NC_005887.1 + 14221 0.7 0.153244
Target:  5'- -gGGCGGCGCCGcGcUGUUCGgCGC-GGCa -3'
miRNA:   3'- caUUGCCGCGGC-C-ACGGGC-GCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 26208 0.77 0.046284
Target:  5'- -gGGCGGCGgUGGccgGCCUGCaGCUGGCg -3'
miRNA:   3'- caUUGCCGCgGCCa--CGGGCG-CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 21067 0.76 0.0549
Target:  5'- ---uCGGCGCCGGUGUggggUgGCGUUGGCu -3'
miRNA:   3'- cauuGCCGCGGCCACG----GgCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 1484 0.75 0.065064
Target:  5'- -cGACGGCGUgCGGcGCUCGCGC-GGCg -3'
miRNA:   3'- caUUGCCGCG-GCCaCGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 18555 0.74 0.076386
Target:  5'- -cGGCGGCGCCGGcuucgcgggcgacaUGCUCGuCGC-GGCg -3'
miRNA:   3'- caUUGCCGCGGCC--------------ACGGGC-GCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 24879 0.73 0.091091
Target:  5'- -aGGCGGCgGCCGaUGCCgCGCGCUcGGUc -3'
miRNA:   3'- caUUGCCG-CGGCcACGG-GCGCGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 22865 0.73 0.099004
Target:  5'- -cGACGGcCGCCGGccGCUaucagauccucgCGCGCUGGUg -3'
miRNA:   3'- caUUGCC-GCGGCCa-CGG------------GCGCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 18375 0.72 0.116813
Target:  5'- -aGACGGCgcGCCGGcGCUCGCGaacccgaUGGCc -3'
miRNA:   3'- caUUGCCG--CGGCCaCGGGCGCg------ACCG- -5'
28013 5' -62.1 NC_005887.1 + 20862 0.71 0.133892
Target:  5'- gGUAACGGUGuuGGcgGCCUgaaugauagugGCGCcGGCg -3'
miRNA:   3'- -CAUUGCCGCggCCa-CGGG-----------CGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.