Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28013 | 5' | -62.1 | NC_005887.1 | + | 26060 | 0.67 | 0.24463 |
Target: 5'- aUggUGGUGCUccuGGUcagcgcgucagcgGCCCGCGC-GGCg -3' miRNA: 3'- cAuuGCCGCGG---CCA-------------CGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 14641 | 0.7 | 0.175099 |
Target: 5'- --cACGGCaGCCGGcgcggugcUGCCCGuCGCcGGUu -3' miRNA: 3'- cauUGCCG-CGGCC--------ACGGGC-GCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 39530 | 0.69 | 0.189509 |
Target: 5'- -cAACuGGCGCCGGcucUGUaccccaauCCGCGCgacgGGCu -3' miRNA: 3'- caUUG-CCGCGGCC---ACG--------GGCGCGa---CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 23278 | 0.69 | 0.194539 |
Target: 5'- cGUGGCGGuUGCCGcaGCCCGCGCcGa- -3' miRNA: 3'- -CAUUGCC-GCGGCcaCGGGCGCGaCcg -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 37447 | 0.69 | 0.194539 |
Target: 5'- --cGCGGCGCU--UGCCUGCGC-GGUu -3' miRNA: 3'- cauUGCCGCGGccACGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 11098 | 0.68 | 0.210336 |
Target: 5'- cGUGGCGcaucgGCUGGUGCgCGCgaaGCUGGCc -3' miRNA: 3'- -CAUUGCcg---CGGCCACGgGCG---CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 10208 | 0.68 | 0.233106 |
Target: 5'- --uGCGucGCGUCGaUGCCCGCGCcggacGGCg -3' miRNA: 3'- cauUGC--CGCGGCcACGGGCGCGa----CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 14710 | 0.68 | 0.233106 |
Target: 5'- -gGGCGG-GCCGGgcgcgGCgaUCGCGCaGGCg -3' miRNA: 3'- caUUGCCgCGGCCa----CG--GGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 21273 | 0.68 | 0.233106 |
Target: 5'- --cGCGGCGgCGGcGUaugCGCuGCUGGCg -3' miRNA: 3'- cauUGCCGCgGCCaCGg--GCG-CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 41269 | 0.7 | 0.166042 |
Target: 5'- -cAAUGGCGCCGucGaCCUGCGCacgGGCg -3' miRNA: 3'- caUUGCCGCGGCcaC-GGGCGCGa--CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 15844 | 0.7 | 0.161672 |
Target: 5'- --cGCGGCGCgaucgaGGgaaacGCCCGCGCgcagcaGGCg -3' miRNA: 3'- cauUGCCGCGg-----CCa----CGGGCGCGa-----CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 14221 | 0.7 | 0.153244 |
Target: 5'- -gGGCGGCGCCGcGcUGUUCGgCGC-GGCa -3' miRNA: 3'- caUUGCCGCGGC-C-ACGGGC-GCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 26208 | 0.77 | 0.046284 |
Target: 5'- -gGGCGGCGgUGGccgGCCUGCaGCUGGCg -3' miRNA: 3'- caUUGCCGCgGCCa--CGGGCG-CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 21067 | 0.76 | 0.0549 |
Target: 5'- ---uCGGCGCCGGUGUggggUgGCGUUGGCu -3' miRNA: 3'- cauuGCCGCGGCCACG----GgCGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 1484 | 0.75 | 0.065064 |
Target: 5'- -cGACGGCGUgCGGcGCUCGCGC-GGCg -3' miRNA: 3'- caUUGCCGCG-GCCaCGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 18555 | 0.74 | 0.076386 |
Target: 5'- -cGGCGGCGCCGGcuucgcgggcgacaUGCUCGuCGC-GGCg -3' miRNA: 3'- caUUGCCGCGGCC--------------ACGGGC-GCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 24879 | 0.73 | 0.091091 |
Target: 5'- -aGGCGGCgGCCGaUGCCgCGCGCUcGGUc -3' miRNA: 3'- caUUGCCG-CGGCcACGG-GCGCGA-CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 22865 | 0.73 | 0.099004 |
Target: 5'- -cGACGGcCGCCGGccGCUaucagauccucgCGCGCUGGUg -3' miRNA: 3'- caUUGCC-GCGGCCa-CGG------------GCGCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 18375 | 0.72 | 0.116813 |
Target: 5'- -aGACGGCgcGCCGGcGCUCGCGaacccgaUGGCc -3' miRNA: 3'- caUUGCCG--CGGCCaCGGGCGCg------ACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 20862 | 0.71 | 0.133892 |
Target: 5'- gGUAACGGUGuuGGcgGCCUgaaugauagugGCGCcGGCg -3' miRNA: 3'- -CAUUGCCGCggCCa-CGGG-----------CGCGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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