miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 5' -62.1 NC_005887.1 + 745 0.66 0.283442
Target:  5'- -gGGCcGCGCCGGccgccgcaccugGgCCGcCGCUGGCc -3'
miRNA:   3'- caUUGcCGCGGCCa-----------CgGGC-GCGACCG- -5'
28013 5' -62.1 NC_005887.1 + 840 0.66 0.313936
Target:  5'- --cGCGGCcgcgaagaaaGCCaaGGUGCCCGUggacGCgUGGCc -3'
miRNA:   3'- cauUGCCG----------CGG--CCACGGGCG----CG-ACCG- -5'
28013 5' -62.1 NC_005887.1 + 1421 0.66 0.299114
Target:  5'- ---uCGGCGUugccgaacuCGGUGCgCGCGC-GGUa -3'
miRNA:   3'- cauuGCCGCG---------GCCACGgGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 1484 0.75 0.065064
Target:  5'- -cGACGGCGUgCGGcGCUCGCGC-GGCg -3'
miRNA:   3'- caUUGCCGCG-GCCaCGGGCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 1944 0.67 0.264444
Target:  5'- cGUGACGGCGaUCGGUGggucgugaaCCCG-GC-GGCc -3'
miRNA:   3'- -CAUUGCCGC-GGCCAC---------GGGCgCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 4625 0.77 0.044983
Target:  5'- --cGCGGCGCCGGUGgCCGC-C-GGCg -3'
miRNA:   3'- cauUGCCGCGGCCACgGGCGcGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 4893 0.66 0.284839
Target:  5'- -cGAUGGuCGCCGaGgGCCgGCGCgaGGUg -3'
miRNA:   3'- caUUGCC-GCGGC-CaCGGgCGCGa-CCG- -5'
28013 5' -62.1 NC_005887.1 + 5014 0.7 0.170516
Target:  5'- --uGCGGCGaCCGaugccaGUGCCgGCGCUGcuGCg -3'
miRNA:   3'- cauUGCCGC-GGC------CACGGgCGCGAC--CG- -5'
28013 5' -62.1 NC_005887.1 + 5416 0.67 0.257914
Target:  5'- -gGGCGGCGCCGcagcgaccgGCgcgaccacgCCGCccGCUGGCa -3'
miRNA:   3'- caUUGCCGCGGCca-------CG---------GGCG--CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 6328 0.66 0.299114
Target:  5'- ---cCGGCGCCgaGGUGa-CGCuGCUGGUu -3'
miRNA:   3'- cauuGCCGCGG--CCACggGCG-CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 6477 0.67 0.277906
Target:  5'- gGgcGCGGCGUcgCGGUGUCUGCcgagcgcaauccGCaGGCg -3'
miRNA:   3'- -CauUGCCGCG--GCCACGGGCG------------CGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 8372 0.7 0.153244
Target:  5'- cGUGauACGGCGCCGGUGCUgacggaCGcCGCacGCg -3'
miRNA:   3'- -CAU--UGCCGCGGCCACGG------GC-GCGacCG- -5'
28013 5' -62.1 NC_005887.1 + 9130 0.66 0.321553
Target:  5'- --cACGGCGCgacCGaGUGCCaGUGC-GGCg -3'
miRNA:   3'- cauUGCCGCG---GC-CACGGgCGCGaCCG- -5'
28013 5' -62.1 NC_005887.1 + 9600 0.66 0.299114
Target:  5'- aUGGCGcGCGCCGGcGCgcacgcgagcgCCGCGCUaccccgccgugGGUg -3'
miRNA:   3'- cAUUGC-CGCGGCCaCG-----------GGCGCGA-----------CCG- -5'
28013 5' -62.1 NC_005887.1 + 10208 0.68 0.233106
Target:  5'- --uGCGucGCGUCGaUGCCCGCGCcggacGGCg -3'
miRNA:   3'- cauUGC--CGCGGCcACGGGCGCGa----CCG- -5'
28013 5' -62.1 NC_005887.1 + 10316 0.67 0.257914
Target:  5'- ----gGGCGUCGGUGCCC-CGCa--- -3'
miRNA:   3'- cauugCCGCGGCCACGGGcGCGaccg -5'
28013 5' -62.1 NC_005887.1 + 10999 0.67 0.257914
Target:  5'- -gGAUGGCG-UGGUGCUCGgGUgcGGCg -3'
miRNA:   3'- caUUGCCGCgGCCACGGGCgCGa-CCG- -5'
28013 5' -62.1 NC_005887.1 + 11098 0.68 0.210336
Target:  5'- cGUGGCGcaucgGCUGGUGCgCGCgaaGCUGGCc -3'
miRNA:   3'- -CAUUGCcg---CGGCCACGgGCG---CGACCG- -5'
28013 5' -62.1 NC_005887.1 + 12564 0.67 0.280663
Target:  5'- -cGACGGcCGCCGGcaugcgcauggUGUCCGCcgacccggccgcgacGCUcGGCg -3'
miRNA:   3'- caUUGCC-GCGGCC-----------ACGGGCG---------------CGA-CCG- -5'
28013 5' -62.1 NC_005887.1 + 13372 0.66 0.313936
Target:  5'- ---cCGGCGauGGcGCUCGCGCUgaaGGCc -3'
miRNA:   3'- cauuGCCGCggCCaCGGGCGCGA---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.