Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28013 | 5' | -62.1 | NC_005887.1 | + | 745 | 0.66 | 0.283442 |
Target: 5'- -gGGCcGCGCCGGccgccgcaccugGgCCGcCGCUGGCc -3' miRNA: 3'- caUUGcCGCGGCCa-----------CgGGC-GCGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 840 | 0.66 | 0.313936 |
Target: 5'- --cGCGGCcgcgaagaaaGCCaaGGUGCCCGUggacGCgUGGCc -3' miRNA: 3'- cauUGCCG----------CGG--CCACGGGCG----CG-ACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 1421 | 0.66 | 0.299114 |
Target: 5'- ---uCGGCGUugccgaacuCGGUGCgCGCGC-GGUa -3' miRNA: 3'- cauuGCCGCG---------GCCACGgGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 1484 | 0.75 | 0.065064 |
Target: 5'- -cGACGGCGUgCGGcGCUCGCGC-GGCg -3' miRNA: 3'- caUUGCCGCG-GCCaCGGGCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 1944 | 0.67 | 0.264444 |
Target: 5'- cGUGACGGCGaUCGGUGggucgugaaCCCG-GC-GGCc -3' miRNA: 3'- -CAUUGCCGC-GGCCAC---------GGGCgCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 4625 | 0.77 | 0.044983 |
Target: 5'- --cGCGGCGCCGGUGgCCGC-C-GGCg -3' miRNA: 3'- cauUGCCGCGGCCACgGGCGcGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 4893 | 0.66 | 0.284839 |
Target: 5'- -cGAUGGuCGCCGaGgGCCgGCGCgaGGUg -3' miRNA: 3'- caUUGCC-GCGGC-CaCGGgCGCGa-CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 5014 | 0.7 | 0.170516 |
Target: 5'- --uGCGGCGaCCGaugccaGUGCCgGCGCUGcuGCg -3' miRNA: 3'- cauUGCCGC-GGC------CACGGgCGCGAC--CG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 5416 | 0.67 | 0.257914 |
Target: 5'- -gGGCGGCGCCGcagcgaccgGCgcgaccacgCCGCccGCUGGCa -3' miRNA: 3'- caUUGCCGCGGCca-------CG---------GGCG--CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 6328 | 0.66 | 0.299114 |
Target: 5'- ---cCGGCGCCgaGGUGa-CGCuGCUGGUu -3' miRNA: 3'- cauuGCCGCGG--CCACggGCG-CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 6477 | 0.67 | 0.277906 |
Target: 5'- gGgcGCGGCGUcgCGGUGUCUGCcgagcgcaauccGCaGGCg -3' miRNA: 3'- -CauUGCCGCG--GCCACGGGCG------------CGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 8372 | 0.7 | 0.153244 |
Target: 5'- cGUGauACGGCGCCGGUGCUgacggaCGcCGCacGCg -3' miRNA: 3'- -CAU--UGCCGCGGCCACGG------GC-GCGacCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 9130 | 0.66 | 0.321553 |
Target: 5'- --cACGGCGCgacCGaGUGCCaGUGC-GGCg -3' miRNA: 3'- cauUGCCGCG---GC-CACGGgCGCGaCCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 9600 | 0.66 | 0.299114 |
Target: 5'- aUGGCGcGCGCCGGcGCgcacgcgagcgCCGCGCUaccccgccgugGGUg -3' miRNA: 3'- cAUUGC-CGCGGCCaCG-----------GGCGCGA-----------CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 10208 | 0.68 | 0.233106 |
Target: 5'- --uGCGucGCGUCGaUGCCCGCGCcggacGGCg -3' miRNA: 3'- cauUGC--CGCGGCcACGGGCGCGa----CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 10316 | 0.67 | 0.257914 |
Target: 5'- ----gGGCGUCGGUGCCC-CGCa--- -3' miRNA: 3'- cauugCCGCGGCCACGGGcGCGaccg -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 10999 | 0.67 | 0.257914 |
Target: 5'- -gGAUGGCG-UGGUGCUCGgGUgcGGCg -3' miRNA: 3'- caUUGCCGCgGCCACGGGCgCGa-CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 11098 | 0.68 | 0.210336 |
Target: 5'- cGUGGCGcaucgGCUGGUGCgCGCgaaGCUGGCc -3' miRNA: 3'- -CAUUGCcg---CGGCCACGgGCG---CGACCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 12564 | 0.67 | 0.280663 |
Target: 5'- -cGACGGcCGCCGGcaugcgcauggUGUCCGCcgacccggccgcgacGCUcGGCg -3' miRNA: 3'- caUUGCC-GCGGCC-----------ACGGGCG---------------CGA-CCG- -5' |
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28013 | 5' | -62.1 | NC_005887.1 | + | 13372 | 0.66 | 0.313936 |
Target: 5'- ---cCGGCGauGGcGCUCGCGCUgaaGGCc -3' miRNA: 3'- cauuGCCGCggCCaCGGGCGCGA---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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